View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9998_low_3 (Length: 484)

Name: NF9998_low_3
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9998_low_3
NF9998_low_3
[»] chr7 (15 HSPs)
chr7 (133-467)||(26154527-26154860)
chr7 (370-456)||(26241957-26242043)
chr7 (408-456)||(26178681-26178729)
chr7 (249-313)||(26239354-26239418)
chr7 (408-456)||(26297043-26297091)
chr7 (364-431)||(26250390-26250457)
chr7 (417-467)||(19104037-19104087)
chr7 (1-46)||(26154356-26154401)
chr7 (414-463)||(26184876-26184925)
chr7 (414-467)||(26190869-26190922)
chr7 (385-427)||(26297003-26297044)
chr7 (365-398)||(26178619-26178652)
chr7 (45-101)||(25075021-25075077)
chr7 (417-453)||(26082337-26082373)
chr7 (417-453)||(26106124-26106160)
[»] chr4 (3 HSPs)
chr4 (47-101)||(43138668-43138722)
chr4 (47-84)||(1605294-1605331)
chr4 (418-467)||(44902849-44902898)


Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 133 - 467
Target Start/End: Original strand, 26154527 - 26154860
Alignment:
Q  133 ataaagtaaatcgtatattccttcctgcacatga--gttttttgaaattcgtggttcatccatgtggatctgttaaacaaatgaaggaaaaattcctttt 230  Q
    |||||||||| ||||||||| ||||||||| |||  || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||     
T  26154527 ataaagtaaagcgtatattctttcctgcacgtgaaagtgttttgaaattcgtggttcattcatgtggatctgttaaacaaatgaaggaaaaattactttc 26154626  T
Q  231 ggtacctactactaccattaaattaaagcgtatattcttccttacacatggaagtgttttgaaattcgtgcttcattcatgtgaatctgttaaacacatg 330  Q
    |||||||||   ||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||| |||||||||||| ||||||||||||||||    
T  26154627 ggtacctac---taccattaaattaaagcgtatattcttccctacacatgaaagtgttatgaaattcgtggttcattcatgtggatctgttaaacacatg 26154723  T
Q  331 aaggaaaaattacttttggtacataccattaaacacttcattggtacctacaattaaatatcaactctagcagtaatagaaccaagcaacaatggagtct 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26154724 aaggaaaaattacttttggtacataccattaaacacttcattggtacctacaactaaatatcaactctagcagtaatagaaccaagcaacaatggagtct 26154823  T
Q  431 caacaatcccataacaaacttcatgtaacttttcttc 467  Q
    ||||||||||||||| |||||||||||||||||||||    
T  26154824 caacaatcccataaccaacttcatgtaacttttcttc 26154860  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 370 - 456
Target Start/End: Original strand, 26241957 - 26242043
Alignment:
Q  370 attggtacctacaattaaatatcaactctagcagtaatagaaccaagcaacaatggagtctcaacaatcccataacaaacttcatgt 456  Q
    ||||| ||||||  ||||||||||| |||   ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26241957 attggaacctacccttaaatatcaattctcctagtaatagaaccaagcaacaatggaatctcaacaatcccataacaaacttcatgt 26242043  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 408 - 456
Target Start/End: Original strand, 26178681 - 26178729
Alignment:
Q  408 agaaccaagcaacaatggagtctcaacaatcccataacaaacttcatgt 456  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26178681 agaaccaagcaacaatggagtctcaacaatcccataacaaacttcatgt 26178729  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 26239354 - 26239418
Alignment:
Q  249 taaattaaagcgtatattcttccttacacatggaagtgttttgaaattcgtgcttcattcatgtg 313  Q
    ||||||||||||||||||||||  |||||||  ||||||||||||||||||||||||||||||||    
T  26239354 taaattaaagcgtatattcttcactacacattaaagtgttttgaaattcgtgcttcattcatgtg 26239418  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 408 - 456
Target Start/End: Original strand, 26297043 - 26297091
Alignment:
Q  408 agaaccaagcaacaatggagtctcaacaatcccataacaaacttcatgt 456  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26297043 agaaccaagcaacaatggagtctcaacaatccaataacaaacttcatgt 26297091  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 364 - 431
Target Start/End: Original strand, 26250390 - 26250457
Alignment:
Q  364 cacttcattggtacctacaattaaatatcaactctagcagtaatagaaccaagcaacaatggagtctc 431  Q
    ||||||||||||||||||  |||||||||||||||   ||||||||||||||||||||||||| ||||    
T  26250390 cacttcattggtacctacccttaaatatcaactctcttagtaatagaaccaagcaacaatggattctc 26250457  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 417 - 467
Target Start/End: Complemental strand, 19104087 - 19104037
Alignment:
Q  417 caacaatggagtctcaacaatcccataacaaacttcatgtaacttttcttc 467  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  19104087 caacaatggaatctcaacaatcccataaccaacttcatgtaacttttcttc 19104037  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 26154356 - 26154401
Alignment:
Q  1 ttaatttcattcaatgctattctgctcctatatcagtatccaacat 46  Q
    ||||| |||||||||||||||||||||||||||| ||| |||||||    
T  26154356 ttaatgtcattcaatgctattctgctcctatatctgtagccaacat 26154401  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 463
Target Start/End: Original strand, 26184876 - 26184925
Alignment:
Q  414 aagcaacaatggagtctcaacaatcccataacaaacttcatgtaactttt 463  Q
    ||||||||||||| || ||| |||||||||||||||||||||||| ||||    
T  26184876 aagcaacaatggactcccaataatcccataacaaacttcatgtaattttt 26184925  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 467
Target Start/End: Original strand, 26190869 - 26190922
Alignment:
Q  414 aagcaacaatggagtctcaacaatcccataacaaacttcatgtaacttttcttc 467  Q
    |||||| |||| | ||||||||||||||||||  ||||||||||||||||||||    
T  26190869 aagcaataatgaaatctcaacaatcccataacccacttcatgtaacttttcttc 26190922  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 26297003 - 26297044
Alignment:
Q  385 taaatatcaactctagcagtaatagaaccaagcaacaatggag 427  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  26297003 taaatatcaactcta-caataatagaaccaagcaacaatggag 26297044  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 398
Target Start/End: Original strand, 26178619 - 26178652
Alignment:
Q  365 acttcattggtacctacaattaaatatcaactct 398  Q
    ||||||||||||||||| ||||||||||||||||    
T  26178619 acttcattggtacctaccattaaatatcaactct 26178652  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 25075021 - 25075077
Alignment:
Q  45 atttaattcacgttgaatttaatacctgcgtgacttaagtaatgttgaaggtatttt 101  Q
    |||||| |||||||| |||||| | |||||||||||||||  ||| |||||||||||    
T  25075021 atttaagtcacgttggatttaacatctgcgtgacttaagttgtgtggaaggtatttt 25075077  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 453
Target Start/End: Original strand, 26082337 - 26082373
Alignment:
Q  417 caacaatggagtctcaacaatcccataacaaacttca 453  Q
    |||||||||||||||||||||| |||||| |||||||    
T  26082337 caacaatggagtctcaacaatctcataaccaacttca 26082373  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 453
Target Start/End: Original strand, 26106124 - 26106160
Alignment:
Q  417 caacaatggagtctcaacaatcccataacaaacttca 453  Q
    |||||||||||||||||||||| |||||| |||||||    
T  26106124 caacaatggagtctcaacaatctcataaccaacttca 26106160  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 43138668 - 43138722
Alignment:
Q  47 ttaattcacgttgaatttaatacctgcgtgacttaagtaatgttgaaggtatttt 101  Q
    |||| |||||||| |||||| || |||||||||||||| ||| ||||||||||||    
T  43138668 ttaagtcacgttgcatttaacacttgcgtgacttaagtcatgctgaaggtatttt 43138722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 1605331 - 1605294
Alignment:
Q  47 ttaattcacgttgaatttaatacctgcgtgacttaagt 84  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  1605331 ttaagtcacgttgaatttaacacctgcgtgacttaagt 1605294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 467
Target Start/End: Original strand, 44902849 - 44902898
Alignment:
Q  418 aacaatggagtctcaacaatcccataacaaacttcatgtaacttttcttc 467  Q
    ||||||||| |||||||||||| ||||| |||||||||||  ||||||||    
T  44902849 aacaatggattctcaacaatccaataaccaacttcatgtagtttttcttc 44902898  T

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