View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9998_low_31 (Length: 246)
Name: NF9998_low_31
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9998_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 18091381 - 18091590
Alignment:
| Q |
18 |
atatgtaacataaaatttcaaagctatttcttacttggaattcggacttgtataactttgaagctatagcatgggcgatgagtaagatatgaagtttagt |
117 |
Q |
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| T |
18091381 |
atatgtaacataaaatttcaaaaatatttcttacttgaaatttggacttgtataactttgaagctgtagcatgggcgatgagtaagatatgaagttcagt |
18091480 |
T |
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| Q |
118 |
atatacttccgtacatattttagtaatttgacatgattccatagaccaattaccagcattgtacacagattcaaacacaacttggacttctggctcgtta |
217 |
Q |
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| T |
18091481 |
atatatttctgtacatactttagtagtttgacatgattccatagaccaattaccaacattgtccacagattcatacacaacttggacttctggctcgtta |
18091580 |
T |
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| Q |
218 |
attgtagccc |
227 |
Q |
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| T |
18091581 |
agtgtagccc |
18091590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 18061293 - 18061499
Alignment:
| Q |
18 |
atatgtaacataaaatttcaaagctatttcttacttggaattcggacttgtataactttgaagctatagcatgggcgatgagtaagatatgaagtttagt |
117 |
Q |
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| T |
18061293 |
atatgtaacataaaatttcgaaaatgtgtcttacttggaatttggacttgtataactttgaagccatagcatgggcgatgaggaagttatgaagtttagt |
18061392 |
T |
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| Q |
118 |
atatacttccgtacatattttagtaatttgacatgattccatagaccaattaccagcattgtacacagattcaaacacaacttggacttctggctcgtta |
217 |
Q |
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| T |
18061393 |
atatacttccgtacatatcttagtagttggacatgggtccgtagacaatttaccaacattgtacacggcttcaaacactgcttgaacttctggctcgtta |
18061492 |
T |
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| Q |
218 |
attgtag |
224 |
Q |
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| T |
18061493 |
aatgtag |
18061499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 18123372 - 18123468
Alignment:
| Q |
46 |
tcttacttggaattcggacttgtataactttgaagctatagcatgggcgatgagtaagatatgaagtttagtatatacttccgtacatattttagta |
142 |
Q |
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| T |
18123372 |
tcttacttggaatttggacttgtataattttgaaatcgtagcatgggatatgagtaagttatgaagtacagtatatacttctgtacaaactttagta |
18123468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 20396654 - 20396558
Alignment:
| Q |
46 |
tcttacttggaattcggacttgtataactttgaagctatagcatgggcgatgagtaagatatgaagtttagtatatacttccgtacatattttagta |
142 |
Q |
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| T |
20396654 |
tcttacttggaatttagacttgtataactttgaaactgtggcatgggatatgagtaagttatgaagtacagtgtatacttctgtacaaactttagta |
20396558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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