View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9998_low_32 (Length: 241)

Name: NF9998_low_32
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9998_low_32
NF9998_low_32
[»] chr2 (20 HSPs)
chr2 (25-231)||(30113502-30113708)
chr2 (25-231)||(30028968-30029174)
chr2 (25-231)||(30223106-30223312)
chr2 (25-231)||(30101967-30102173)
chr2 (25-231)||(30091649-30091855)
chr2 (25-231)||(30128254-30128460)
chr2 (25-231)||(30170566-30170772)
chr2 (25-229)||(30185180-30185384)
chr2 (25-217)||(30278905-30279097)
chr2 (25-228)||(30789638-30789841)
chr2 (25-229)||(30067579-30067783)
chr2 (25-216)||(30251294-30251485)
chr2 (45-218)||(30022305-30022478)
chr2 (45-218)||(30038217-30038390)
chr2 (45-218)||(30080711-30080884)
chr2 (45-218)||(30107695-30107868)
chr2 (45-218)||(30119644-30119817)
chr2 (45-218)||(30232355-30232528)
chr2 (55-218)||(30056844-30057007)
chr2 (45-218)||(30134343-30134515)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 30113708 - 30113502
Alignment:
Q  25 cttgaagattcagaagcacctccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30113708 cttgaagattcagaagcacctccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagt 30113609  T
Q  125 ccattggccaaactgaagaatcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctttggtctct 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30113608 ccattggccaaactgaagaatcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctttggtcttt 30113509  T
Q  225 gcttctc 231  Q
    |||||||    
T  30113508 gcttctc 30113502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 30029174 - 30028968
Alignment:
Q  25 cttgaagattcagaagcacctccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagt 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30029174 cttgaagattcagaagcacctccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaact 30029075  T
Q  125 ccattggccaaactgaagaatcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctttggtctct 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  30029074 ccattggccaaactgaagaatcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcactgttgctttggtcttt 30028975  T
Q  225 gcttctc 231  Q
    |||||||    
T  30028974 gcttctc 30028968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 30223312 - 30223106
Alignment:
Q  25 cttgaagattcagaagcacctccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagt 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30223312 cttgaagattcagaagcacctccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaact 30223213  T
Q  125 ccattggccaaactgaagaatcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctttggtctct 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  30223212 ccattggccaaactgaagaatcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcactgttgctttggtcttt 30223113  T
Q  225 gcttctc 231  Q
    |||||||    
T  30223112 gcttctc 30223106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 30102173 - 30101967
Alignment:
Q  25 cttgaagattcagaagcacctccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| || || ||||    
T  30102173 cttgaagattcagaagcacctccagcccattccaaagaccatttccacatatcaccaataaatatattgtatctctcaagctttgcaaatacatgtaagt 30102074  T
Q  125 ccattggccaaactgaagaatcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctttggtctct 224  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30102073 cccttggccaaactgaagaatcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctttggtcttt 30101974  T
Q  225 gcttctc 231  Q
    |||||||    
T  30101973 gcttctc 30101967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 30091855 - 30091649
Alignment:
Q  25 cttgaagattcagaagcacctccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| || || ||||    
T  30091855 cttgaagattcagaagcacctccagcccattccaaagaccatttccacatatcaccaataaatatattgtatctctcaagctttgcaaatacatgtaagt 30091756  T
Q  125 ccattggccaaactgaagaatcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctttggtctct 224  Q
    || |||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||||||||| |||| |    
T  30091755 cccttggccaaactgaagaatcttgaatcattatgtccaaagtttttagatgagacagattacttagctcttctagacttgcattgttgctttcgtcttt 30091656  T
Q  225 gcttctc 231  Q
    |||||||    
T  30091655 gcttctc 30091649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 30128460 - 30128254
Alignment:
Q  25 cttgaagattcagaagcacctccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| || || ||||    
T  30128460 cttgaagattcagaagcacctccagcccattccaaagaccatttccacatatcaccaataaatatattgtatctctcaagctttgcaaatacatgtaagt 30128361  T
Q  125 ccattggccaaactgaagaatcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctttggtctct 224  Q
    || |||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||||||||| |||| |    
T  30128360 cccttggccaaactgaagaatcttgaatcattatgtccaaagtttttagatgagacagattacttagctcttctagacttgcattgttgctttcgtcttt 30128261  T
Q  225 gcttctc 231  Q
    |||||||    
T  30128260 gcttctc 30128254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 30170772 - 30170566
Alignment:
Q  25 cttgaagattcagaagcacctccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagt 124  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30170772 cttgaagattcagaagcacctccagaccattccaaagtccatttccacatatcaccaataaatatattgtatctctcaagctttgcaaagacctgcaagt 30170673  T
Q  125 ccattggccaaactgaagaatcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctttggtctct 224  Q
     |  ||||||  | |||  |||||||||||| ||||||||||| ||||| || || ||||||| ||||||||| ||||||||| | || ||||| ||| |    
T  30170672 tccgtggccatgccgaaacatcttgaatcattatgtccaaagtagttagttgagaaagattacatagctcttctagacttgcacttttcctttgatcttt 30170573  T
Q  225 gcttctc 231  Q
    |||||||    
T  30170572 gcttctc 30170566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 25 - 229
Target Start/End: Original strand, 30185180 - 30185384
Alignment:
Q  25 cttgaagattcagaagcacctccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagt 124  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||||||| | |||||||| |||||| |||||||| ||||||||| ||||||| |||||||    
T  30185180 cttgaaggttcagaagcacctccagaccaatccaaagaccatttccacatatcaccaacaaatatgttgtatctttcaagctttccaaagacctgcaagt 30185279  T
Q  125 ccattggccaaactgaagaatcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctttggtctct 224  Q
    || ||||| ||||||||| |||| ||||||| ||||| ||||| |||||||| |||| ||| | |||||| || |||| |||| |||||||||| ||| |    
T  30185280 cccttggcaaaactgaagcatctcgaatcattatgtctaaagtagttagatgagacaaattccttagctcatctagacatgcactgttgctttgttcttt 30185379  T
Q  225 gcttc 229  Q
    |||||    
T  30185380 gcttc 30185384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 25 - 217
Target Start/End: Complemental strand, 30279097 - 30278905
Alignment:
Q  25 cttgaagattcagaagcacctccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagt 124  Q
    ||||| |||||||| ||||||||||||     ||||||||||||||||| |||||||| ||| || |||||||| ||||| ||| ||||||| |||||||    
T  30279097 cttgatgattcagatgcacctccagccataaacaaagaccatttccatatatcaccaacaaagatgttgtatctttcaagtttttcaaagacctgcaagt 30278998  T
Q  125 ccattggccaaactgaagaatcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgcttt 217  Q
    |||||||||||||||||| |||||||||||| ||||| ||||| |||||||| |||| ||||| |||||| || |||||||||||||||||||    
T  30278997 ccattggccaaactgaagcatcttgaatcattatgtctaaagtagttagatgagacaaattacttagctcctctagacttgcattgttgcttt 30278905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 30789841 - 30789638
Alignment:
Q  25 cttgaagattcagaagcacctccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagt 124  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||| | |||||||| |||||| |||||||| |||||||||||||| || |||||||    
T  30789841 cttgaagattcagaagcacctccagaccattccaaagaccatctccacatatcaccaacaaatatgttgtatctttcaagctttgcaaaaacctgcaagt 30789742  T
Q  125 ccattggccaaactgaagaatcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctttggtctct 224  Q
    || | ||| ||||||||| |||||||||||| ||||| ||||| || |  || |||| ||| | ||||||||| |||||||||||  ||||||| ||| |    
T  30789741 ccttgggcaaaactgaagcatcttgaatcattatgtctaaagtagtcaattgagacaaattccttagctcttctagacttgcattcctgctttgatcttt 30789642  T
Q  225 gctt 228  Q
    ||||    
T  30789641 gctt 30789638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 30067783 - 30067579
Alignment:
Q  25 cttgaagattcagaagcacctccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagt 124  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||| | ||||||||||||||| |||||||| ||||||||| ||||||| ||||| |    
T  30067783 cttgaagattcagaagcacatccagaccattccaaagaccatttccacatatcaccaataaatatgttgtatctatcaagcttttcaaagacctgcaaat 30067684  T
Q  125 ccattggccaaactgaagaatcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctttggtctct 224  Q
    || | ||||||| ||||| ||| |||||||| ||||| || | |||||||||||||| ||| |  | |||||| ||||||||||  || ||||| ||| |    
T  30067683 ccctcggccaaattgaagcatcctgaatcattatgtctaatgatgttagatgtgacaaattccaaatctcttctagacttgcatgattactttgatcttt 30067584  T
Q  225 gcttc 229  Q
    |||||    
T  30067583 gcttc 30067579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 216
Target Start/End: Complemental strand, 30251485 - 30251294
Alignment:
Q  25 cttgaagattcagaagcacctccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagt 124  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||   |||||||| |||||| |||||||| ||||||||| |||| || |||||||    
T  30251485 cttgaagattcagaagcacccccagaccattccaaagaccatttccacctatcaccaacaaatatgttgtatctttcaagcttttcaaaaacctgcaagt 30251386  T
Q  125 ccattggccaaactgaagaatcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctt 216  Q
    || ||||| |||| |||| |||||||||||| ||||| ||||| ||||||||   || ||| | ||||||||| ||||||||||| ||||||    
T  30251385 cccttggcaaaacagaagcatcttgaatcattatgtctaaagtagttagatgaagcaaattccttagctcttctagacttgcatttttgctt 30251294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 45 - 218
Target Start/End: Complemental strand, 30022478 - 30022305
Alignment:
Q  45 tccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagtccattggccaaactgaagaa 144  Q
    ||||| ||| ||||||||||||||||| | |||||||| |||||| |||||||| ||||||||| |||||||| |||||||| | ||||||||||||| |    
T  30022478 tccagaccagtccaaagaccatttccacatatcaccaacaaatatgttgtatctttcaagcttttcaaagactagcaagtccctaggccaaactgaagca 30022379  T
Q  145 tcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctttg 218  Q
    |||||| |||| ||||||||||  |||||||| |||| | | | ||||||||| ||||||||||| ||||||||    
T  30022378 tcttgagtcattatgtccaaagcggttagatgagacaaactccttagctcttctagacttgcatttttgctttg 30022305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 45 - 218
Target Start/End: Original strand, 30038217 - 30038390
Alignment:
Q  45 tccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagtccattggccaaactgaagaa 144  Q
    ||||| ||| ||||||||||||||||| | |||||||| |||||| |||||||| ||||||||| |||||||| |||||||| | ||||||||||||| |    
T  30038217 tccagaccagtccaaagaccatttccacatatcaccaacaaatatgttgtatctttcaagcttttcaaagactagcaagtccctaggccaaactgaagca 30038316  T
Q  145 tcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctttg 218  Q
    |||||| |||| ||||||||||  |||||||| |||| | | | ||||||||| ||||||||||| ||||||||    
T  30038317 tcttgagtcattatgtccaaagcggttagatgagacaaactccttagctcttctagacttgcatttttgctttg 30038390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 45 - 218
Target Start/End: Complemental strand, 30080884 - 30080711
Alignment:
Q  45 tccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagtccattggccaaactgaagaa 144  Q
    ||||| ||| ||||||||||||||||| | |||||||| |||||| |||||||| ||||||||| |||||||| |||||||| | ||||||||||||| |    
T  30080884 tccagaccagtccaaagaccatttccacatatcaccaacaaatatgttgtatctttcaagcttttcaaagactagcaagtccctaggccaaactgaagca 30080785  T
Q  145 tcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctttg 218  Q
    |||||| |||| ||||||||||  |||||||| |||| | | | ||||||||| ||||||||||| ||||||||    
T  30080784 tcttgagtcattatgtccaaagcggttagatgagacaaactccttagctcttctagacttgcatttttgctttg 30080711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 45 - 218
Target Start/End: Original strand, 30107695 - 30107868
Alignment:
Q  45 tccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagtccattggccaaactgaagaa 144  Q
    ||||| ||| ||||||||||||||||| | |||||||| |||||| |||||||| ||||||||| |||||||| |||||||| | ||||||||||||| |    
T  30107695 tccagaccagtccaaagaccatttccacatatcaccaacaaatatgttgtatctttcaagcttttcaaagactagcaagtccctaggccaaactgaagca 30107794  T
Q  145 tcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctttg 218  Q
    |||||| |||| ||||||||||  |||||||| |||| | | | ||||||||| ||||||||||| ||||||||    
T  30107795 tcttgagtcattatgtccaaagcggttagatgagacaaactccttagctcttctagacttgcatttttgctttg 30107868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 45 - 218
Target Start/End: Original strand, 30119644 - 30119817
Alignment:
Q  45 tccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagtccattggccaaactgaagaa 144  Q
    ||||| ||| ||||||||||||||||| | |||||||| |||||| |||||||| ||||||||| |||||||| |||||||| | ||||||||||||| |    
T  30119644 tccagaccagtccaaagaccatttccacatatcaccaacaaatatgttgtatctttcaagcttttcaaagactagcaagtccctaggccaaactgaagca 30119743  T
Q  145 tcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctttg 218  Q
    |||||| |||| ||||||||||  |||||||| |||| | | | ||||||||| ||||||||||| ||||||||    
T  30119744 tcttgagtcattatgtccaaagcggttagatgagacaaactccttagctcttctagacttgcatttttgctttg 30119817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 45 - 218
Target Start/End: Original strand, 30232355 - 30232528
Alignment:
Q  45 tccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagtccattggccaaactgaagaa 144  Q
    ||||| ||| ||||||||||||||||| | |||||||| |||||| |||||||| ||||||||| |||||||| |||||||| | ||||||||||||| |    
T  30232355 tccagaccagtccaaagaccatttccacatatcaccaacaaatatgttgtatctttcaagcttttcaaagactagcaagtccctaggccaaactgaagca 30232454  T
Q  145 tcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctttg 218  Q
    |||||| |||| ||||||||||  |||||||| |||| | | | ||||||||| ||||||||||| ||||||||    
T  30232455 tcttgagtcattatgtccaaagcggttagatgagacaaactccttagctcttctagacttgcatttttgctttg 30232528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 30057007 - 30056844
Alignment:
Q  55 tccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagtccattggccaaactgaagaatcttgaatca 154  Q
    ||||||||||||||||| | |||||||||| |||| |||||||| ||||||||| |||||||| |||||||| | ||||||||||||| ||||||| |||    
T  30057007 tccaaagaccatttccacatatcaccaatatatatgttgtatctttcaagcttttcaaagactagcaagtccctaggccaaactgaagcatcttgagtca 30056908  T
Q  155 tgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctttg 218  Q
    | ||||||||||  |||||||| |||| | | | ||||||||| ||||||||||| ||||||||    
T  30056907 ttatgtccaaagcggttagatgagacaaactccttagctcttctagacttgcatttttgctttg 30056844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 218
Target Start/End: Original strand, 30134343 - 30134515
Alignment:
Q  45 tccagcccattccaaagaccatttccatacatcaccaataaatatattgtatctctcaagctttgcaaagacttgcaagtccattggccaaactgaagaa 144  Q
    ||||| ||| ||||||||||||||||| | |||||||| | |||| |||||||| ||||||||| |||||||| |||||||| | ||||||||||||| |    
T  30134343 tccagaccagtccaaagaccatttccacatatcaccaacatatatgttgtatctttcaagcttt-caaagactagcaagtccctaggccaaactgaagca 30134441  T
Q  145 tcttgaatcatgatgtccaaagttgttagatgtgacagattacctagctcttccagacttgcattgttgctttg 218  Q
    |||||| |||| ||||||||||  |||||||| |||| | |   ||||||||| ||||||||||| ||||||||    
T  30134442 tcttgagtcattatgtccaaagcggttagatgagacaaactcnttagctcttctagacttgcatttttgctttg 30134515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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