View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9998_low_34 (Length: 240)

Name: NF9998_low_34
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9998_low_34
NF9998_low_34
[»] chr2 (6 HSPs)
chr2 (48-221)||(35700368-35700541)
chr2 (120-171)||(10862742-10862793)
chr2 (125-170)||(42182725-42182770)
chr2 (127-171)||(9792386-9792430)
chr2 (116-168)||(13294326-13294378)
chr2 (136-176)||(19494265-19494305)
[»] chr8 (3 HSPs)
chr8 (120-171)||(7465637-7465688)
chr8 (120-167)||(4203055-4203102)
chr8 (120-174)||(4047544-4047598)
[»] chr4 (3 HSPs)
chr4 (120-174)||(42884798-42884852)
chr4 (122-177)||(25902805-25902860)
chr4 (124-174)||(47785902-47785952)
[»] chr5 (3 HSPs)
chr5 (116-173)||(36896612-36896669)
chr5 (120-171)||(10142160-10142211)
chr5 (124-174)||(10142913-10142963)
[»] chr1 (5 HSPs)
chr1 (120-175)||(3979636-3979691)
chr1 (136-171)||(4043994-4044029)
chr1 (116-171)||(29119515-29119570)
chr1 (120-171)||(36017894-36017945)
chr1 (124-171)||(46835301-46835348)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 48 - 221
Target Start/End: Complemental strand, 35700541 - 35700368
Alignment:
Q  48 attatgacgtccgacttaatgattttaacatttttatcagttaagttagaattatggacaatgacacacaaatgggtgtagtttgctgatttacacctta 147  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| ||||| |||||||||||||||||||||||||    
T  35700541 attatgacgttcaacttaatgattttaacatttttatcagttaagttaaaattacggacaaagacacataaatgagtgtagtttgctgatttacacctta 35700442  T
Q  148 atatttttaggtgagtgtaaattaacaacctttaacaaataattgaccgctaacaagacataccattgatcgta 221  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  35700441 atatttttaggtgaatgtaaattaacaatctttaacaaataattgactgctaacaagacataccattgatcgta 35700368  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 10862793 - 10862742
Alignment:
Q  120 tgggtgtagtttgctgatttacaccttaatatttttaggtgagtgtaaatta 171  Q
    ||||||||| ||||| |||||||||||| | |||||||||| ||||||||||    
T  10862793 tgggtgtagcttgctaatttacaccttagtgtttttaggtgggtgtaaatta 10862742  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 42182770 - 42182725
Alignment:
Q  125 gtagtttgctgatttacaccttaatatttttaggtgagtgtaaatt 170  Q
    |||||||||| |||||||||||| | |||||||||| |||||||||    
T  42182770 gtagtttgctaatttacaccttagtgtttttaggtgggtgtaaatt 42182725  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 9792386 - 9792430
Alignment:
Q  127 agtttgctgatttacaccttaatatttttaggtgagtgtaaatta 171  Q
    |||||||| |||||||||||| |||||||| ||| ||||||||||    
T  9792386 agtttgctaatttacaccttagtatttttaagtgggtgtaaatta 9792430  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 13294326 - 13294378
Alignment:
Q  116 caaatgggtgtagtttgctgatttacaccttaatatttttaggtgagtgtaaa 168  Q
    ||||||| ||||||||| | |||||||| ||| | ||||||||||||||||||    
T  13294326 caaatggatgtagtttgttaatttacactttagtctttttaggtgagtgtaaa 13294378  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 19494305 - 19494265
Alignment:
Q  136 atttacaccttaatatttttaggtgagtgtaaattaacaac 176  Q
    |||||||||||||| |||||||||| |||||||||| ||||    
T  19494305 atttacaccttaatttttttaggtgggtgtaaattagcaac 19494265  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 7465688 - 7465637
Alignment:
Q  120 tgggtgtagtttgctgatttacaccttaatatttttaggtgagtgtaaatta 171  Q
    ||||||||| ||||| |||||| ||||||||||||||||||||| |||||||    
T  7465688 tgggtgtaggttgctaatttactccttaatatttttaggtgagtataaatta 7465637  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 4203102 - 4203055
Alignment:
Q  120 tgggtgtagtttgctgatttacaccttaatatttttaggtgagtgtaa 167  Q
    ||||||||| ||||| |||| ||||||| |||||||||||||||||||    
T  4203102 tgggtgtagcttgctaatttgcaccttagtatttttaggtgagtgtaa 4203055  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 4047598 - 4047544
Alignment:
Q  120 tgggtgtagtttgctgatttacaccttaatatttttaggtgagtgtaaattaaca 174  Q
    ||||||||| ||||| | || |||||||||||||||| |||||||||| ||||||    
T  4047598 tgggtgtaggttgctaacttgcaccttaatatttttaagtgagtgtaagttaaca 4047544  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 42884852 - 42884798
Alignment:
Q  120 tgggtgtagtttgctgatttacaccttaatatttttaggtgagtgtaaattaaca 174  Q
    |||||||| |||||| |||||||||||| | |||||| |||||||||||||||||    
T  42884852 tgggtgtaatttgctaatttacaccttagtgtttttaagtgagtgtaaattaaca 42884798  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 25902860 - 25902805
Alignment:
Q  122 ggtgtagtttgctgatttacaccttaatatttttaggtgagtgtaaattaacaacc 177  Q
    ||||||| || || |||||| ||||||||||||||||||  |||||||||||||||    
T  25902860 ggtgtaggtttctaatttactccttaatatttttaggtggttgtaaattaacaacc 25902805  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 47785952 - 47785902
Alignment:
Q  124 tgtagtttgctgatttacaccttaatatttttaggtgagtgtaaattaaca 174  Q
    ||||| ||||| |||||||||||| |  |||||||||||||||||||||||    
T  47785952 tgtagattgctaatttacaccttattggttttaggtgagtgtaaattaaca 47785902  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 36896669 - 36896612
Alignment:
Q  116 caaatgggtgtagtttgctgatttacaccttaatatttttaggtgagtgtaaattaac 173  Q
    |||||| |||||| ||||| |  ||||||||||| |||||||||||||||||||||||    
T  36896669 caaatgagtgtaggttgctaacatacaccttaatgtttttaggtgagtgtaaattaac 36896612  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 10142211 - 10142160
Alignment:
Q  120 tgggtgtagtttgctgatttacaccttaatatttttaggtgagtgtaaatta 171  Q
    ||||||||| ||||| |||||||||||| ||||||||| || ||||||||||    
T  10142211 tgggtgtagcttgctaatttacaccttagtatttttagatgggtgtaaatta 10142160  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 10142913 - 10142963
Alignment:
Q  124 tgtagtttgctgatttacaccttaatatttttaggtgagtgtaaattaaca 174  Q
    ||||||||||| |||||||||||| ||||||| | || |||||||||||||    
T  10142913 tgtagtttgctaatttacaccttagtatttttcgatgggtgtaaattaaca 10142963  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 3979691 - 3979636
Alignment:
Q  120 tgggtgtagtttgctgatttacaccttaatatttttaggtgagtgtaaattaacaa 175  Q
    ||||||||| ||||| |||||||||  ||| |||||||||| ||||||||||||||    
T  3979691 tgggtgtagcttgctaatttacaccaaaatgtttttaggtgggtgtaaattaacaa 3979636  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 4043994 - 4044029
Alignment:
Q  136 atttacaccttaatatttttaggtgagtgtaaatta 171  Q
    |||||| |||||||||||||||||||||||||||||    
T  4043994 atttactccttaatatttttaggtgagtgtaaatta 4044029  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 29119515 - 29119570
Alignment:
Q  116 caaatgggtgtagtttgctgatttacaccttaatatttttaggtgagtgtaaatta 171  Q
    ||||||||||||| ||||| | |||||||||| |||||||| ||| ||||||||||    
T  29119515 caaatgggtgtaggttgctaacttacaccttagtatttttaagtgggtgtaaatta 29119570  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 36017945 - 36017894
Alignment:
Q  120 tgggtgtagtttgctgatttacaccttaatatttttaggtgagtgtaaatta 171  Q
    |||||||||||||||  ||||||||||||| |||| ||||| ||||||||||    
T  36017945 tgggtgtagtttgctagtttacaccttaatgttttgaggtgggtgtaaatta 36017894  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 46835301 - 46835348
Alignment:
Q  124 tgtagtttgctgatttacaccttaatatttttaggtgagtgtaaatta 171  Q
    ||||| ||||| |||||||||||||| |||||||||| ||||||||||    
T  46835301 tgtagcttgctaatttacaccttaatgtttttaggtgtgtgtaaatta 46835348  T

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