View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9998_low_38 (Length: 208)

Name: NF9998_low_38
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9998_low_38
NF9998_low_38
[»] chr7 (4 HSPs)
chr7 (34-206)||(30229735-30229907)
chr7 (125-206)||(30232537-30232618)
chr7 (34-92)||(30232469-30232527)
chr7 (1-41)||(30229718-30229758)
[»] chr2 (5 HSPs)
chr2 (93-203)||(27026967-27027077)
chr2 (154-206)||(26987479-26987531)
chr2 (125-204)||(27077772-27077851)
chr2 (38-82)||(26987384-26987429)
chr2 (34-79)||(27077852-27077897)
[»] chr6 (2 HSPs)
chr6 (164-206)||(34689538-34689580)
chr6 (38-82)||(34689491-34689536)


Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 30229735 - 30229907
Alignment:
Q  34 ttgaactatttcattggtacaacctaagcttgttagacttgcattcttatatatatgttgtttgattttactgaactggttttccccttttacttcatca 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30229735 ttgaactatttcattggtacaacctaagcttgttagacttgcattcttatatatatgttgtttgattttactgaactggttttccccttttacttcatca 30229834  T
Q  134 ttaaacagtatggnnnnnnnatttacggaggcttttgtttcttatagagaaatgaactaattatgcatgcaca 206  Q
    |||||||||||||       ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30229835 ttaaacagtatggtttttttatttatggaggcttttgtttcttatagagaaatgaactaattatgcatgcaca 30229907  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 30232537 - 30232618
Alignment:
Q  125 acttcatcattaaacagtatggnnnnnnnatttacggaggcttttgtttcttatagagaaatgaactaattatgcatgcaca 206  Q
    |||||||||||||| |||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30232537 acttcatcattaaatagtatggattttttatttacggaggcttttgtttcttatagagaaatgaactaatgatgcatgcaca 30232618  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 30232469 - 30232527
Alignment:
Q  34 ttgaactatttcattggtacaacctaagcttgttagacttgcattcttatatatatgtt 92  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||    
T  30232469 ttgaactatttcattggtacagcctaagcttgttagacttgcattcttaagtatatgtt 30232527  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30229758 - 30229718
Alignment:
Q  1 ggttgtaccaatgaaatagttcaaaatgaaagattgaacta 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30229758 ggttgtaccaatgaaatagttcaaaatgaaagattgaacta 30229718  T

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Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 93 - 203
Target Start/End: Original strand, 27026967 - 27027077
Alignment:
Q  93 gtttgattttactgaactggttttccccttttacttcatcattaaacagtatggnnnnnnnatttacggaggcttttgtttcttatagagaaatgaacta 192  Q
    ||||||||| |  |||||||||| |||| || |||||||||||||||||||| |       ||||| ||||||| |||||||||||||||||||||||||    
T  27026967 gtttgatttaagcgaactggtttccccccttcacttcatcattaaacagtattgattttttatttaaggaggctgttgtttcttatagagaaatgaacta 27027066  T
Q  193 attatgcatgc 203  Q
    || ||||||||    
T  27027067 atgatgcatgc 27027077  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 26987479 - 26987531
Alignment:
Q  154 atttacggaggcttttgtttcttatagagaaatgaactaattatgcatgcaca 206  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26987479 atttacggaggcttttgtttcttatagagaaatgaactaatgatgcatgcaca 26987531  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 27077851 - 27077772
Alignment:
Q  125 acttcatcattaaacagtatggnnnnnnnatttacggaggcttttgtttcttatagagaaatgaactaattatgcatgca 204  Q
    |||||||||||||||||||| |       ||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  27077851 acttcatcattaaacagtattgattttttattaacggaggcttttgtttcttatagagaaatgaactaatgatgcatgca 27077772  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 26987384 - 26987429
Alignment:
Q  38 actatttcattggtacaacct-aagcttgttagacttgcattctta 82  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||    
T  26987384 actatttcattggtacagccttaagcttgttagacttgcattctta 26987429  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 27077897 - 27077852
Alignment:
Q  34 ttgaactatttcattggtacaacctaagcttgttagacttgcattc 79  Q
    |||||||||||| |||||||| | ||||||||||||||||||||||    
T  27077897 ttgaactatttcgttggtacagcttaagcttgttagacttgcattc 27077852  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 34689538 - 34689580
Alignment:
Q  164 gcttttgtttcttatagagaaatgaactaattatgcatgcaca 206  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  34689538 gcttttgtttcttatagagaaatgaactaatgatgcatgcaca 34689580  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 34689491 - 34689536
Alignment:
Q  38 actatttcattggtacaacct-aagcttgttagacttgcattctta 82  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||    
T  34689491 actatttcattggtacagccttaagcttgttagacttgcattctta 34689536  T

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