View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9998_low_4 (Length: 478)
Name: NF9998_low_4
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9998_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 3 - 456
Target Start/End: Original strand, 10663075 - 10663525
Alignment:
| Q |
3 |
agacagaaacctcaagttccctgcaccagaaaaaccagtccgaaatagcagaaaatgatcgaaaaacacaggtattaaatcagacaattctgaggcaatg |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10663075 |
agacagaaacctcaagttccctgcaccagaaaaaccagtccgaaatagcagaaaatgatcgaaaaacacaggtattaaatcagacaattctgaggcaatg |
10663174 |
T |
|
| Q |
103 |
agacatgttccatatatttaacccccaacgtcacgacatagcttttatgttactaaccacctccttctgatcaataacctcatttgcnnnnnnnnnnnnn |
202 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10663175 |
agacatgttccatatatttaacccccaacgccacgacatagcttttatgttactaaccacctccttctgatcaataacctcatttgcaaaaaaaaataaa |
10663274 |
T |
|
| Q |
203 |
nnnnntcatttctaaatttccaatcaacgtaagaacaaattggaggaatcacgatagctaatccaagccaccggaacacctctttccacatttttaaagc |
302 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10663275 |
aa---tcatttctaaatttccaatcaacgtaaaaacaaattggaggaatcacgatagctaatccaagccaccggaacacctctttccacacttttaaagc |
10663371 |
T |
|
| Q |
303 |
aaagtcacagaacaaaaatagatgaatatatatttccaccatatcaatatattatgttatcttaaatgtagattatttaatattatcctgtttgtatata |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10663372 |
aaagtcacagaacaaaaatagatgaatatatatttccaccatatcaatatattatgttatcttaaatgtagattatttaatattatgctgtttgtatata |
10663471 |
T |
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| Q |
403 |
tgtttttctgagnnnnnnncctttgtgtgtataatgaagtaatggagtctaagt |
456 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10663472 |
tgtttttctgagtttttttcctttgtgtgtataatgaagtaatggagtctaagt |
10663525 |
T |
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