View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9998_low_5 (Length: 463)
Name: NF9998_low_5
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9998_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 17 - 337
Target Start/End: Original strand, 38897562 - 38897890
Alignment:
| Q |
17 |
atagactttgcttttgatcttaattcgaagttaaaatttggagtttttacttcttcaattaatttttaacattgactttattgttcgaacaatgtttaca |
116 |
Q |
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| T |
38897562 |
atagactttgttttttatcttaattcgaagttaaaatttggagtttttacttcttcaattaatttttaacattgactttattgttcgaacaatgtttaca |
38897661 |
T |
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| Q |
117 |
tgaaatggatttaaacattaattattttacgttccatccacttttaaaaatcaactttaccactttg--------tttaccaaattaattctttcgaaat |
208 |
Q |
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| T |
38897662 |
tgaaatggatttaaacattaattattttacattcaattcacttttaaaaatcaactttaccactttggaaacaattttaccaaattaattctttcgaaat |
38897761 |
T |
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| Q |
209 |
aattatttttcaccttgatcagcttttattttgaagagagtttcattttcacatttcaaaagtaaatttataaaaattaaaagtagatatgtgaaaaggg |
308 |
Q |
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| T |
38897762 |
aattatttttcaccttgatcagcttttattttgaagagagtttcattttcacatttcaaaagtaaatttataaaaattaaaagtagatatgtgaaaaggg |
38897861 |
T |
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| Q |
309 |
aattaaacttatacaagaagttggtgtct |
337 |
Q |
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| T |
38897862 |
aattaaacttatacaagaagttggtgtct |
38897890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 423 - 453
Target Start/End: Original strand, 38897976 - 38898006
Alignment:
| Q |
423 |
gatcatcatccaacgtgtgtatttgtctgtg |
453 |
Q |
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| T |
38897976 |
gatcatcatccaacgtgtgtatttgtctgtg |
38898006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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