View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9998_low_7 (Length: 459)

Name: NF9998_low_7
Description: NF9998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9998_low_7
NF9998_low_7
[»] chr4 (23 HSPs)
chr4 (12-444)||(24238897-24239326)
chr4 (78-124)||(44449518-44449564)
chr4 (82-122)||(56915-56955)
chr4 (82-124)||(12796664-12796706)
chr4 (83-125)||(15853819-15853861)
chr4 (16-122)||(20610739-20610845)
chr4 (82-124)||(49039500-49039542)
chr4 (80-117)||(12585612-12585649)
chr4 (16-124)||(41492488-41492595)
chr4 (16-124)||(54854168-54854276)
chr4 (82-121)||(17431378-17431417)
chr4 (78-124)||(12289685-12289731)
chr4 (82-124)||(20166314-20166356)
chr4 (82-124)||(38657538-38657580)
chr4 (78-124)||(39449398-39449444)
chr4 (82-116)||(42432014-42432048)
chr4 (82-124)||(43049988-43050030)
chr4 (78-124)||(54264926-54264972)
chr4 (82-123)||(4419741-4419782)
chr4 (82-119)||(14504688-14504725)
chr4 (78-131)||(17268614-17268667)
chr4 (79-124)||(20925091-20925135)
chr4 (16-124)||(33359815-33359923)
[»] chr6 (14 HSPs)
chr6 (18-117)||(30905488-30905587)
chr6 (22-125)||(14339722-14339825)
chr6 (83-124)||(9422831-9422872)
chr6 (76-124)||(31411110-31411158)
chr6 (41-119)||(20858397-20858475)
chr6 (82-124)||(22730757-22730799)
chr6 (78-124)||(31639139-31639185)
chr6 (82-124)||(34524873-34524915)
chr6 (82-121)||(4844144-4844183)
chr6 (82-121)||(8309165-8309204)
chr6 (82-124)||(9031764-9031806)
chr6 (82-124)||(10455740-10455782)
chr6 (16-123)||(3029965-3030073)
chr6 (16-124)||(24256914-24257022)
[»] chr3 (23 HSPs)
chr3 (17-125)||(28951863-28951971)
chr3 (78-125)||(3461775-3461822)
chr3 (19-120)||(33533205-33533306)
chr3 (16-121)||(51017791-51017895)
chr3 (82-125)||(30745786-30745829)
chr3 (82-124)||(16874245-16874287)
chr3 (82-124)||(19137617-19137659)
chr3 (21-119)||(23237365-23237463)
chr3 (82-124)||(24130557-24130599)
chr3 (82-125)||(3973299-3973342)
chr3 (82-125)||(3996534-3996577)
chr3 (82-121)||(23305747-23305786)
chr3 (82-124)||(6951845-6951887)
chr3 (82-123)||(24160583-24160624)
chr3 (78-119)||(24890076-24890117)
chr3 (83-124)||(38507646-38507687)
chr3 (82-123)||(40160734-40160775)
chr3 (82-122)||(4010073-4010113)
chr3 (82-122)||(12143462-12143502)
chr3 (78-118)||(16999932-16999972)
chr3 (82-122)||(31108815-31108855)
chr3 (16-48)||(36842236-36842268)
chr3 (75-111)||(51412038-51412074)
[»] chr2 (12 HSPs)
chr2 (16-124)||(39334870-39334978)
chr2 (63-124)||(36277738-36277799)
chr2 (73-125)||(34376539-34376591)
chr2 (16-125)||(14307683-14307792)
chr2 (79-119)||(19064944-19064984)
chr2 (16-124)||(25463255-25463363)
chr2 (16-124)||(34107272-34107380)
chr2 (61-124)||(6496437-6496500)
chr2 (81-124)||(32677333-32677376)
chr2 (76-124)||(15392260-15392308)
chr2 (16-124)||(22355081-22355189)
chr2 (19-51)||(38379475-38379507)
[»] chr7 (19 HSPs)
chr7 (63-122)||(1513487-1513546)
chr7 (82-125)||(17305445-17305488)
chr7 (16-124)||(3246478-3246583)
chr7 (78-124)||(14772386-14772432)
chr7 (78-124)||(15222838-15222884)
chr7 (82-124)||(43209399-43209441)
chr7 (82-124)||(43635586-43635628)
chr7 (19-124)||(7162660-7162765)
chr7 (63-124)||(8766847-8766908)
chr7 (83-124)||(38032911-38032952)
chr7 (34-118)||(24427367-24427451)
chr7 (16-124)||(35498396-35498503)
chr7 (61-125)||(37410515-37410579)
chr7 (82-125)||(8147241-8147284)
chr7 (82-124)||(7392361-7392403)
chr7 (83-121)||(43712369-43712407)
chr7 (16-121)||(23470490-23470594)
chr7 (78-122)||(41012632-41012676)
chr7 (82-122)||(44409201-44409241)
[»] chr1 (18 HSPs)
chr1 (82-124)||(18179326-18179368)
chr1 (16-121)||(9769569-9769674)
chr1 (61-124)||(7015721-7015784)
chr1 (21-124)||(9768803-9768906)
chr1 (82-124)||(18003814-18003856)
chr1 (79-123)||(5862127-5862171)
chr1 (16-124)||(42908769-42908877)
chr1 (78-125)||(49632290-49632337)
chr1 (82-124)||(1580827-1580869)
chr1 (78-124)||(3140356-3140402)
chr1 (82-124)||(9931085-9931127)
chr1 (78-124)||(33694540-33694586)
chr1 (82-124)||(52961137-52961179)
chr1 (78-111)||(3569055-3569088)
chr1 (76-124)||(25819182-25819231)
chr1 (82-123)||(43327009-43327050)
chr1 (82-119)||(47141861-47141898)
chr1 (82-122)||(1721140-1721180)
[»] scaffold0712 (1 HSPs)
scaffold0712 (82-125)||(4517-4560)
[»] scaffold0709 (1 HSPs)
scaffold0709 (82-125)||(4537-4580)
[»] scaffold0168 (1 HSPs)
scaffold0168 (82-124)||(34088-34130)
[»] chr8 (20 HSPs)
chr8 (82-124)||(7345426-7345468)
chr8 (16-124)||(220351-220459)
chr8 (16-124)||(689506-689614)
chr8 (16-124)||(733974-734082)
chr8 (16-124)||(857870-857978)
chr8 (79-123)||(12986471-12986515)
chr8 (82-124)||(216202-216244)
chr8 (82-124)||(692762-692804)
chr8 (82-124)||(696971-697013)
chr8 (82-124)||(729825-729867)
chr8 (82-124)||(853720-853762)
chr8 (82-124)||(18577111-18577153)
chr8 (75-124)||(21133567-21133617)
chr8 (82-124)||(39432383-39432425)
chr8 (18-124)||(41531213-41531319)
chr8 (16-122)||(42711160-42711266)
chr8 (83-124)||(25470902-25470943)
chr8 (82-122)||(14011093-14011133)
chr8 (82-122)||(26657856-26657896)
chr8 (76-124)||(41793022-41793069)
[»] chr5 (10 HSPs)
chr5 (82-124)||(11246549-11246591)
chr5 (78-124)||(17557028-17557074)
chr5 (24-121)||(38040267-38040363)
chr5 (75-124)||(40250225-40250274)
chr5 (16-124)||(3535925-3536033)
chr5 (16-124)||(35813232-35813339)
chr5 (75-124)||(3102175-3102225)
chr5 (82-124)||(25660910-25660952)
chr5 (76-125)||(17178271-17178320)
chr5 (75-123)||(22867040-22867088)
[»] scaffold0054 (1 HSPs)
scaffold0054 (16-121)||(67162-67267)
[»] scaffold1808 (1 HSPs)
scaffold1808 (82-124)||(888-930)
[»] scaffold1343 (1 HSPs)
scaffold1343 (82-119)||(932-969)


Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 444
Target Start/End: Original strand, 24238897 - 24239326
Alignment:
Q  12 tggtgtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactga 111  Q
    |||||||| || |||||||||||||||||||||||||||||  ||||    ||||||||  | |  |||||||||||||||||  || ||| ||||||||    
T  24238897 tggtgtggctataattcacttttttcaaagtaaataaatggggtatctgaggttcgaactctgatccctacatataacaatgc--gtccctaccaactga 24238994  T
Q  112 gttatgctcacggacactcaaaataaggtttccattagtggattctttaaccgatgcaaccggttagcaagaccacaaaactaacatgcaaaacacac-- 209  Q
    |||||||| ||||| |||||||| |||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||      
T  24238995 gttatgcttacggagactcaaaacaaggtttctattagtggattctttgaccgatgcaacccgttagcaagaccacaaaactaacatgcaaaacacacac 24239094  T
Q  210 ggcattaatattgtgaactgggcaaggaggatgcatctnnnnnnnnngtcgttagtcaaacaaacaagataaaacacatgaaaacttctacttggttacg 309  Q
    ||||||||||||||  || |||||||||||||||||||         || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24239095 ggcattaatattgtagacggggcaaggaggatgcatctaaaaaaa--gtagttagtcaaacaaacaagataaaacacatgaaaacttctacttggttacg 24239192  T
Q  310 tagtctacattcaaactctgaactttactcccatgcatatatataaatccctttagaccagaaggtagaat--caccaaatattaaggagaaatggcaga 407  Q
    |||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||    
T  24239193 tagtctacattcaaactctgaactttcctcccatgc--atatataaatccctttagaccagaaggtagaatcacaccaaata-taaggagaaatggcaga 24239289  T
Q  408 gggaaatacaagtagcagaagcagtaagtggtctttg 444  Q
    |||||||||||||||||||||||||||||||||||||    
T  24239290 gggaaatacaagtagcagaagcagtaagtggtctttg 24239326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 44449518 - 44449564
Alignment:
Q  78 cctacatataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||    
T  44449518 cctacatataacaatgcatgttcctgctaactgagttatgctcacgg 44449564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 56915 - 56955
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcac 122  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  56915 catataacaatgcatgtccctgccaactgagttatgctcac 56955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 12796706 - 12796664
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  12796706 catataacaatgtatgttcctgccaactgagttatgctcacgg 12796664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 15853861 - 15853819
Alignment:
Q  83 atataacaatgcatgtacctgccaactgagttatgctcacgga 125  Q
    |||||||||||||||| |||||||||||| |||||||||||||    
T  15853861 atataacaatgcatgttcctgccaactgaattatgctcacgga 15853819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 20610845 - 20610739
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    |||| |||||||||| ||||| || || ||||| ||| || ||| ||||||||||     | ||| ||||||||||||||||| ||||||||||||| ||    
T  20610845 gtggctagaattcaccttttttaaggtgaataagtgggatgtccggagttcgaaccccggcccctgcatataacaatgcatgtccctgccaactgagcta 20610746  T
Q  116 tgctcac 122  Q
    |||||||    
T  20610745 tgctcac 20610739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 49039500 - 49039542
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  49039500 catataacaatgcatgtccctgccaactgagctatgctcacgg 49039542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 12585612 - 12585649
Alignment:
Q  80 tacatataacaatgcatgtacctgccaactgagttatg 117  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  12585612 tacatataacaatgcatgtccctgccaactgagttatg 12585649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 41492488 - 41492595
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    |||| |||||||||| |||||||| |||||||| |||  | ||||| ||||||||     | ||| ||||||| ||||||||| ||||||||||||| ||    
T  41492488 gtggctagaattcacctttttcaaggtaaataagtggggtgtccag-gttcgaaccccggcccctgcatataataatgcatgtccctgccaactgagcta 41492586  T
Q  116 tgctcacgg 124  Q
    |||||||||    
T  41492587 tgctcacgg 41492595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 54854168 - 54854276
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    |||| ||||||||||||||||||| || ||||| ||  || ||| | ||||||||   | | ||| |||||||  |||||||| ||||||||||||| ||    
T  54854168 gtggctagaattcacttttttcaaggtgaataagtgtgatgtccggggttcgaaccccagcccctgcatataattatgcatgtccctgccaactgagcta 54854267  T
Q  116 tgctcacgg 124  Q
    |||||||||    
T  54854268 tgctcacgg 54854276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 17431417 - 17431378
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctca 121  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  17431417 catataacaatgcatgtccctgtcaactgagttatgctca 17431378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 12289685 - 12289731
Alignment:
Q  78 cctacatataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||||||| | |||  ||||||||||||||||||||    
T  12289685 cctacatataacaatgcatattcctatcaactgagttatgctcacgg 12289731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 20166356 - 20166314
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||||| ||||||||||||| || ||||||||    
T  20166356 catataacaatgcatgtccctgccaactgagctacgctcacgg 20166314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 38657580 - 38657538
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||||| |||||||||||||  ||||||||||    
T  38657580 catataacaatgcatgtccctgccaactgagccatgctcacgg 38657538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 39449444 - 39449398
Alignment:
Q  78 cctacatataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||| ||||||||| ||||||| |||||||||| ||||||    
T  39449444 cctacatataataatgcatgtccctgccagctgagttatgttcacgg 39449398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 116
Target Start/End: Complemental strand, 42432048 - 42432014
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttat 116  Q
    ||||||||||||||||| |||||||||||||||||    
T  42432048 catataacaatgcatgtccctgccaactgagttat 42432014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 43049988 - 43050030
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||||| |||| |||||||| |||||||||||    
T  43049988 catataacaatgcatgttcctgtcaactgagctatgctcacgg 43050030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 54264972 - 54264926
Alignment:
Q  78 cctacatataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||||||||||||||||||  |||||| ||||| |||||||||||    
T  54264972 cctacatataacaatgcatgtttctgccagctgagctatgctcacgg 54264926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 4419741 - 4419782
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacg 123  Q
    |||||||||||||||||  ||| |||||||||||||||||||    
T  4419741 catataacaatgcatgtctctgacaactgagttatgctcacg 4419782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 14504688 - 14504725
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgct 119  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  14504688 catataacaatgcatgttcttgccaactgagttatgct 14504725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 17268614 - 17268667
Alignment:
Q  78 cctacatataacaatgcatgtacctgccaactgagttatgctcacggacactca 131  Q
    ||||||||||| ||| ||||| ||||||||||||  ||||||||||| ||||||    
T  17268614 cctacatataataatacatgttcctgccaactgaactatgctcacgggcactca 17268667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 20925135 - 20925091
Alignment:
Q  79 ctacatataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||||||||||| ||||| ||||| |||||||||||||||||||    
T  20925135 ctacatataacaatccatgtccctgc-aactgagttatgctcacgg 20925091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 33359923 - 33359815
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    |||| |||||||||| |||||||| || ||||| |||  | ||||| |||||||| |  || | | |||||||||||| |||| | || |||||||| ||    
T  33359923 gtggctagaattcacctttttcaaggtgaataagtggggtgtccagggttcgaacctcgacccttgcatataacaatgaatgtccatgtcaactgagcta 33359824  T
Q  116 tgctcacgg 124  Q
    |||||||||    
T  33359823 tgctcacgg 33359815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 30905587 - 30905488
Alignment:
Q  18 ggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagttatg 117  Q
    ||||||||||||| |||| |||||| ||||| ||| ||||||||  ||||||| | ||  ||||||||||||||||||||| ||| ||||||||||||||    
T  30905587 ggttagaattcaccttttccaaagttaataagtgggatatccaggattcgaacctcaatccctacatataacaatgcatgttcctaccaactgagttatg 30905488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 14339722 - 14339825
Alignment:
Q  22 agaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagttatgctca 121  Q
    ||||||||| ||||||||  ||||||| ||  || || || |||||||||| ||| ||| |||||||||||||||||| ||| || ||||||||||||||    
T  14339722 agaattcacctttttcaagataaataagtgagatgtctagggttcgaacatcaacccctgcatataacaatgcatgtatctgacagctgagttatgctca 14339821  T
Q  122 cgga 125  Q
    ||||    
T  14339822 cgga 14339825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 9422872 - 9422831
Alignment:
Q  83 atataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  9422872 atataacaatgcatgtccctgccaactgagttatgctcacgg 9422831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 31411110 - 31411158
Alignment:
Q  76 ctcctacatataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||| ||||||||| |||| ||||||||||||||||||||    
T  31411110 ctcctacatataataatgcatgttcctgtcaactgagttatgctcacgg 31411158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 20858397 - 20858475
Alignment:
Q  41 gtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagttatgct 119  Q
    ||||||||||||  | ||| || |||||||   ||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  20858397 gtaaataaatggggtgtccggaattcgaaccccaacccctgcatataacaatgcatgtccctgccaactgagttatgct 20858475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 22730757 - 22730799
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  22730757 catataacaatgcatgtctctgccaactgagttatgctcacgg 22730799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 31639185 - 31639139
Alignment:
Q  78 cctacatataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||||| ||| |||| ||||||||||||||||||||    
T  31639185 cctacatataacaatgcgtgtccctgtcaactgagttatgctcacgg 31639139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 34524915 - 34524873
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  34524915 catataacaatgcatgtccctgccaactgagctatgctcacgg 34524873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 4844183 - 4844144
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctca 121  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  4844183 catataacaatgcatgtccctgccaactgagttatactca 4844144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 8309204 - 8309165
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctca 121  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  8309204 catataacaatgcatgtccctgccaactgagctatgctca 8309165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 9031806 - 9031764
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||    
T  9031806 catataacaatgcatgtccctgccaactgagctatgttcacgg 9031764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 10455782 - 10455740
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||||| ||||||||||||  |||||||||||    
T  10455782 catataacaatgcatgttcctgccaactgaactatgctcacgg 10455740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 3030073 - 3029965
Alignment:
Q  16 gtggttagaattcac-ttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtt 114  Q
    ||||||||||||||| |||||| || || ||||| |||  | ||||| ||||||||   |||  |||||||||| |||  |||| |||||||||| ||||    
T  3030073 gtggttagaattcacatttttttaaggtgaataagtggggtgtccagggttcgaactccaaccactacatataataatttatgtccctgccaactaagtt 3029974  T
Q  115 atgctcacg 123  Q
    |||||||||    
T  3029973 atgctcacg 3029965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 24257022 - 24256914
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    |||| ||||||| ||||||||||| || ||||| |||  ||||| | |||||||| |   | ||| ||||||| |||||||||  || |||||||| |||    
T  24257022 gtggctagaatttacttttttcaaggtgaataagtggggtatccggggttcgaacctcggcccctgcatataataatgcatgtctctaccaactgactta 24256923  T
Q  116 tgctcacgg 124  Q
    |||||||||    
T  24256922 tgctcacgg 24256914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 28951971 - 28951863
Alignment:
Q  17 tggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagttat 116  Q
    |||||||||||||| |||||||| || ||||| |||  | | | | ||||||||  | || ||| ||||||| |||||||||| ||||||||||||||||    
T  28951971 tggttagaattcacatttttcaaggtgaataagtggggtgttcggggttcgaaccctgacccctgcatataataatgcatgtatctgccaactgagttat 28951872  T
Q  117 gctcacgga 125  Q
    |||||||||    
T  28951871 gctcacgga 28951863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 3461775 - 3461822
Alignment:
Q  78 cctacatataacaatgcatgtacctgccaactgagttatgctcacgga 125  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||    
T  3461775 cctacatataacaatgcatgtccctgtcaactgagttatgctcacgga 3461822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 33533306 - 33533205
Alignment:
Q  19 gttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagttatgc 118  Q
    |||||||||||||||||| || || ||||| ||| || || |  ||||||||   |||  ||||||||||||||||||||  ||||||||||||||||||    
T  33533306 gttagaattcactttttttaaggtgaataagtgggatgtctatggttcgaaccccaaccactacatataacaatgcatgtctctgccaactgagttatgc 33533207  T
Q  119 tc 120  Q
    ||    
T  33533206 tc 33533205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 51017895 - 51017791
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    |||| |||||||||||||||||||||| ||||| |||  | ||| | ||||||||    |||||| ||||||||||||||||| ||||||||||||| ||    
T  51017895 gtggctagaattcacttttttcaaagtgaataagtggggtgtccgg-gttcgaactccgactcctgcatataacaatgcatgtccctgccaactgagcta 51017797  T
Q  116 tgctca 121  Q
    | ||||    
T  51017796 tactca 51017791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 30745786 - 30745829
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgga 125  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||    
T  30745786 catataacaatgcatgtccctgccaactgagctatgctcacgga 30745829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 16874245 - 16874287
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  16874245 catataacaatgcatgtccctgccaactgagctatgctcacgg 16874287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 19137659 - 19137617
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  19137659 catataacaatgcatgttcctgccaactgagctatgctcacgg 19137617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 23237463 - 23237365
Alignment:
Q  21 tagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagttatgct 119  Q
    |||||||||| |||||||| || ||||  ||| || ||| ||||||||||    || ||||||||||| ||||||||| ||||||||||||| ||||||    
T  23237463 tagaattcacctttttcaacgtgaatatgtgggatgtccggagttcgaactccgacccctacatataataatgcatgtccctgccaactgagctatgct 23237365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 24130599 - 24130557
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  24130599 catataacaatgtatgtccctgccaactgagttatgctcacgg 24130557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 3973342 - 3973299
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgga 125  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||||    
T  3973342 catataacaatgcatgtccctaccaactgagctatgctcacgga 3973299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 3996534 - 3996577
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgga 125  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||||    
T  3996534 catataacaatgcatgtccctaccaactgagctatgctcacgga 3996577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 23305786 - 23305747
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctca 121  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  23305786 catataacaatgcatgtccctaccaactgagttatgctca 23305747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 6951845 - 6951887
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||| ||||||||| |||| ||||||||||||||||||||    
T  6951845 catataataatgcatgtccctgtcaactgagttatgctcacgg 6951887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 24160583 - 24160624
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacg 123  Q
    ||||||||| |||||||  |||||||||||||||||||||||    
T  24160583 catataacagtgcatgtctctgccaactgagttatgctcacg 24160624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 24890117 - 24890076
Alignment:
Q  78 cctacatataacaatgcatgtacctgccaactgagttatgct 119  Q
    ||||||||||||||||||||| | || |||||||||||||||    
T  24890117 cctacatataacaatgcatgtccttgtcaactgagttatgct 24890076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 38507687 - 38507646
Alignment:
Q  83 atataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||| ||||||||| ||||||||||||| |||||||||||    
T  38507687 atataataatgcatgtccctgccaactgagctatgctcacgg 38507646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 40160775 - 40160734
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacg 123  Q
    ||||||||||||||||| |||||||| |||| ||||||||||    
T  40160775 catataacaatgcatgtccctgccaattgagctatgctcacg 40160734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 4010073 - 4010113
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcac 122  Q
    ||||||||||||||||| ||| ||||||||| |||||||||    
T  4010073 catataacaatgcatgtccctaccaactgagctatgctcac 4010113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 12143462 - 12143502
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcac 122  Q
    ||||||||||||||||| ||||||||||||| |||| ||||    
T  12143462 catataacaatgcatgtccctgccaactgagctatgttcac 12143502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 16999972 - 16999932
Alignment:
Q  78 cctacatataacaatgcatgtacctgccaactgagttatgc 118  Q
    ||||||||||| ||||||||| ||||||||| |||||||||    
T  16999972 cctacatataataatgcatgtccctgccaacagagttatgc 16999932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 31108815 - 31108855
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcac 122  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  31108815 catataattatgcatgtccctgccaactgagttatgctcac 31108855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 36842268 - 36842236
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataa 48  Q
    ||||||||||||||||||||||||||| |||||    
T  36842268 gtggttagaattcacttttttcaaagtgaataa 36842236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 51412038 - 51412074
Alignment:
Q  75 actcctacatataacaatgcatgtacctgccaactga 111  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  51412038 actcctgcatataacaatgcatgtccctgccaactga 51412074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 39334870 - 39334978
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    |||| |||||||||| ||||||||||| ||||| ||| || ||  ||||||||||   | | |||  |||||| ||||||||| ||||||||||||||||    
T  39334870 gtggctagaattcacctttttcaaagtgaataagtgggatgtctggagttcgaaccccagcccctgtatataataatgcatgtccctgccaactgagtta 39334969  T
Q  116 tgctcacgg 124  Q
    |||||||||    
T  39334970 tgctcacgg 39334978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 36277738 - 36277799
Alignment:
Q  63 gttcgaacattaactcctacatataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||||| | ||| |||||||||||||||||||||  |||||||||||| |||||||||||    
T  36277738 gttcgaacttcaacccctacatataacaatgcatgtcactgccaactgagctatgctcacgg 36277799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 34376591 - 34376539
Alignment:
Q  73 taactcctacatataacaatgcatgtacctgccaactgagttatgctcacgga 125  Q
    |||||||| ||||||||||||||||| |||||||||||| |||| ||||||||    
T  34376591 taactcctgcatataacaatgcatgtccctgccaactgaattatactcacgga 34376539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 14307683 - 14307792
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    |||| |||||||||||||||| ||||| ||||| |||  | | | | |||||||| |  || ||| ||||||||||||||||| ||| |||||||||  |    
T  14307683 gtggctagaattcactttttttaaagtgaataagtggggtgttcggggttcgaacctcgacccctgcatataacaatgcatgtccctaccaactgagcca 14307782  T
Q  116 tgctcacgga 125  Q
    ||||||||||    
T  14307783 tgctcacgga 14307792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 19064944 - 19064984
Alignment:
Q  79 ctacatataacaatgcatgtacctgccaactgagttatgct 119  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  19064944 ctacatataacaatgcatgtccctgccaaatgagttatgct 19064984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 25463255 - 25463363
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    |||||||||||||| ||||||||| || |||||| ||  | | | |||||||||| | ||  |||  ||||||||||| |||| |||||||| || ||||    
T  25463255 gtggttagaattcatttttttcaaggtgaataaaaggggtgttcggagttcgaacctcaatccctgtatataacaatgaatgtccctgccaattgggtta 25463354  T
Q  116 tgctcacgg 124  Q
    |||||||||    
T  25463355 tgctcacgg 25463363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 34107380 - 34107272
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    |||| |||||||||| |||||||| || ||||| |||  | ||  |||||||||| | ||| ||| |||||||  || ||||| ||||||||||||| ||    
T  34107380 gtggctagaattcacatttttcaaggtgaataagtggggtgtctggagttcgaacctcaacccctgcatataattatacatgtccctgccaactgagcta 34107281  T
Q  116 tgctcacgg 124  Q
    |||||||||    
T  34107280 tgctcacgg 34107272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 6496500 - 6496437
Alignment:
Q  61 gagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||| | |  ||||||||||||||||||||| ||| ||||||||| |||||| ||||    
T  6496500 gagttcgaacactgaaccctacatataacaatgcatgtcccttccaactgagctatgctaacgg 6496437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 32677376 - 32677333
Alignment:
Q  81 acatataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||||||||||||| | |||| ||||||||||||||||||||    
T  32677376 acatataacaatgcatattcctgtcaactgagttatgctcacgg 32677333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 15392260 - 15392308
Alignment:
Q  76 ctcctacatataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||| |||||||   ||| |||||||||||||||||||||    
T  15392260 ctcctacatataataatgcattgtcctaccaactgagttatgctcacgg 15392308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 22355189 - 22355081
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    |||| |||||||||| |||| ||| || ||||| |||  | ||  |||||||||  | ||| ||| || |||||||||||||| | ||||||||||| ||    
T  22355189 gtggctagaattcaccttttgcaaggtgaataagtggggtgtctggagttcgaaactcaacccctgcacataacaatgcatgtccttgccaactgagcta 22355090  T
Q  116 tgctcacgg 124  Q
    |||||||||    
T  22355089 tgctcacgg 22355081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 38379475 - 38379507
Alignment:
Q  19 gttagaattcacttttttcaaagtaaataaatg 51  Q
    |||||||||||||||||||||||| ||||||||    
T  38379475 gttagaattcacttttttcaaagtgaataaatg 38379507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 1513546 - 1513487
Alignment:
Q  63 gttcgaacattaactcctacatataacaatgcatgtacctgccaactgagttatgctcac 122  Q
    |||||||| | ||| ||||||||||||||||||||| |||||||||||| ||||||||||    
T  1513546 gttcgaacctcaacccctacatataacaatgcatgtccctgccaactgatttatgctcac 1513487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 17305445 - 17305488
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgga 125  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||    
T  17305445 catataacaatgcatgtccctgccaactgagctatgctcacgga 17305488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 3246478 - 3246583
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    ||||||||||||||| ||||||||||||||||| | |  | | | |||||||||| | | | ||   |||||||||||||||| |||| |||||||| ||    
T  3246478 gtggttagaattcacctttttcaaagtaaataagtagggtgttcggagttcgaacctcagcccc---atataacaatgcatgtccctgtcaactgagcta 3246574  T
Q  116 tgctcacgg 124  Q
    |||||||||    
T  3246575 tgctcacgg 3246583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 14772386 - 14772432
Alignment:
Q  78 cctacatataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||| |||||||||||||  ||||||||||||||||||||||||    
T  14772386 cctacatgtaacaatgcatgtctctgccaactgagttatgctcacgg 14772432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 15222838 - 15222884
Alignment:
Q  78 cctacatataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||| |||||||||||||  ||||||||||||||||||||||||    
T  15222838 cctacatgtaacaatgcatgtctctgccaactgagttatgctcacgg 15222884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 43209441 - 43209399
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||||| |||||||||||||||||| ||||||    
T  43209441 catataacaatgcatgttcctgccaactgagttatgttcacgg 43209399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 43635628 - 43635586
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  43635628 catataacaatgcatgtttctgccaactgagttatgctcacgg 43635586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 7162660 - 7162765
Alignment:
Q  19 gttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagttatgc 118  Q
    |||||||||||| ||||||||  | ||||| ||| |||| ||||||||||||    || ||| ||||||||||||||| | ||||||||  ||||||||     
T  7162660 gttagaattcacctttttcaagatgaataagtggaatattcagagttcgaaccccgacccctgcatataacaatgcatatccctgccaatcgagttatgt 7162759  T
Q  119 tcacgg 124  Q
    ||||||    
T  7162760 tcacgg 7162765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 8766847 - 8766908
Alignment:
Q  63 gttcgaacattaactcctacatataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||||| | ||| ||| ||||| |||||| |||| |||||||||||||||||||||||||    
T  8766847 gttcgaacttcaacccctgcatatgacaatgaatgtccctgccaactgagttatgctcacgg 8766908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 38032911 - 38032952
Alignment:
Q  83 atataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  38032911 atataacaatgcatgtccctgccaactgagttatgttcacgg 38032952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 118
Target Start/End: Complemental strand, 24427451 - 24427367
Alignment:
Q  34 tttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagttatgc 118  Q
    |||||| || |||||||||  ||| | | |||||||| || || ||| |||||||||||||||||  ||||||||||||||||||    
T  24427451 tttcaaggtgaataaatggggtattcggggttcgaaccttgacccctgcatataacaatgcatgtctctgccaactgagttatgc 24427367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 35498503 - 35498396
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    |||| |||||||||| ||||||||||| ||||| |||  | |||  |||| ||||   ||| ||| ||||||| ||||||||| ||||||||||||||||    
T  35498503 gtggctagaattcacctttttcaaagtgaataagtggggtgtccgaagtttgaaccc-aacccctgcatataataatgcatgtccctgccaactgagtta 35498405  T
Q  116 tgctcacgg 124  Q
    |||| ||||    
T  35498404 tgcttacgg 35498396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 37410515 - 37410579
Alignment:
Q  61 gagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagttatgctcacgga 125  Q
    |||||||||| || || ||| ||||||||||||||||| | | ||||||||| ||||||||||||    
T  37410515 gagttcgaaccttgacccctgcatataacaatgcatgtccttaccaactgagctatgctcacgga 37410579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 8147241 - 8147284
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgga 125  Q
    ||||||||||||||||| |||||||| |||| ||||||||||||    
T  8147241 catataacaatgcatgtccctgccaattgagctatgctcacgga 8147284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 7392361 - 7392403
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||||| |||||||| |||| |||||||||||    
T  7392361 catataacaatgcatgttcctgccaattgagctatgctcacgg 7392403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 43712369 - 43712407
Alignment:
Q  83 atataacaatgcatgtacctgccaactgagttatgctca 121  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  43712369 atataacaatgcatgtccctaccaactgagttatgctca 43712407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 23470490 - 23470594
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    |||||||||| |||| ||||||||  | ||||||||| || ||| | ||||||||  || | ||||||||||| ||| ||||| | ||||||||||| ||    
T  23470490 gtggttagaactcacctttttcaagatgaataaatgggatgtccggggttcgaactctagc-cctacatataataatacatgttcatgccaactgagcta 23470588  T
Q  116 tgctca 121  Q
    ||||||    
T  23470589 tgctca 23470594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 41012632 - 41012676
Alignment:
Q  78 cctacatataacaatgcatgtacctgccaactgagttatgctcac 122  Q
    ||||||||||||||||||||| ||| |||| |||| |||||||||    
T  41012632 cctacatataacaatgcatgtccctaccaattgagctatgctcac 41012676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 44409241 - 44409201
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcac 122  Q
    ||||||| ||||||||| ||||| |||||||||||||||||    
T  44409241 catataataatgcatgtccctgctaactgagttatgctcac 44409201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 18179368 - 18179326
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  18179368 catataacaatgcatgtccctgccaactgagttatgctcacgg 18179326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 9769569 - 9769674
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    ||||||||||||||| |||||||| || ||||| |||  | ||| | ||||||||   ||  ||||||||||| ||||||||| ||||||||||||| ||    
T  9769569 gtggttagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccaatccctacatataataatgcatgtccctgccaactgagcta 9769668  T
Q  116 tgctca 121  Q
    ||||||    
T  9769669 tgctca 9769674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 7015721 - 7015784
Alignment:
Q  61 gagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||||||| | | | ||||||||||||||||||||| || |||||||||| |||||||||||    
T  7015721 gagttcgaacctcagcccctacatataacaatgcatgtcccagccaactgagctatgctcacgg 7015784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 9768803 - 9768906
Alignment:
Q  21 tagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagttatgctc 120  Q
    |||||||||| |||||||| || ||||| |||  | ||| | ||||||||    || ||| ||||||||||||||||| ||||||||||||| |||||||    
T  9768803 tagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtccctgccaactgagctatgctc 9768902  T
Q  121 acgg 124  Q
    ||||    
T  9768903 acgg 9768906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 18003856 - 18003814
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  18003856 catataacaatgcatgtccctgccaactgagctatgctcacgg 18003814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 5862171 - 5862127
Alignment:
Q  79 ctacatataacaatgcatgtacctgccaactgagttatgctcacg 123  Q
    |||||||||||||||||||| ||||||||||||| |||| |||||    
T  5862171 ctacatataacaatgcatgtccctgccaactgagctatgttcacg 5862127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 42908877 - 42908769
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    ||||||||||||| | ||||||||    ||||| |||  ||||| ||||||||||    || ||| ||||||||||||||||| ||||||||||||| ||    
T  42908877 gtggttagaattctcctttttcaagaagaataagtggggtatccggagttcgaaccccgacccctgcatataacaatgcatgtccctgccaactgagcta 42908778  T
Q  116 tgctcacgg 124  Q
     ||||||||    
T  42908777 agctcacgg 42908769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 49632337 - 49632290
Alignment:
Q  78 cctacatataacaatgcatgtacctgccaactgagttatgctcacgga 125  Q
    ||||||||||||||||||||| |||||||| |||| || |||||||||    
T  49632337 cctacatataacaatgcatgtccctgccaattgagctacgctcacgga 49632290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 1580869 - 1580827
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||| || |||| |||||||||||||||||||||||||    
T  1580869 catataacattgtatgtccctgccaactgagttatgctcacgg 1580827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 3140402 - 3140356
Alignment:
Q  78 cctacatataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||||||||||||||||||  ||| |||||||||||| |||||||    
T  3140402 cctacatataacaatgcatgtctctgtcaactgagttatactcacgg 3140356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 9931127 - 9931085
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||| ||||||||| ||||| |||||||||||||||||||    
T  9931127 catataataatgcatgtccctgctaactgagttatgctcacgg 9931085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 33694586 - 33694540
Alignment:
Q  78 cctacatataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||| ||||||| | |||||||||| ||||||||||||||    
T  33694586 cctacatataataatgcatatccctgccaactaagttatgctcacgg 33694540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 52961137 - 52961179
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||||| | ||||||||||| |||||||||||    
T  52961137 catataacaatgcatgtccttgccaactgagctatgctcacgg 52961179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 3569088 - 3569055
Alignment:
Q  78 cctacatataacaatgcatgtacctgccaactga 111  Q
    ||||||||||||||||||||| ||||||||||||    
T  3569088 cctacatataacaatgcatgtccctgccaactga 3569055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 25819231 - 25819182
Alignment:
Q  76 ctcctacatataacaatgcat-gtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||| ||||||| || ||||||||||||| |||||||||||    
T  25819231 ctcctacatataataatgcattgtccctgccaactgagctatgctcacgg 25819182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 43327050 - 43327009
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacg 123  Q
    ||||||||||| ||||| ||||| ||||||||||||||||||    
T  43327050 catataacaatacatgtccctgcaaactgagttatgctcacg 43327009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 47141861 - 47141898
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgct 119  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  47141861 catataacaatgcatgtccctgtcaactgagttatgct 47141898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 1721180 - 1721140
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcac 122  Q
    ||||||||||||||||| ||| ||||||||| |||||||||    
T  1721180 catataacaatgcatgttcctaccaactgagctatgctcac 1721140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 4560 - 4517
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgga 125  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||    
T  4560 catataacaatgcatgtccctgccaactgagctatgctcacgga 4517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 4580 - 4537
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgga 125  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||    
T  4580 catataacaatgcatgtccctgccaactgagctatgctcacgga 4537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 34088 - 34130
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  34088 catataacaatgcatgtccctgccaactgagctatgctcacgg 34130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 7345468 - 7345426
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||| ||||||||| |||||||||||||||||||||||||    
T  7345468 catataataatgcatgtccctgccaactgagttatgctcacgg 7345426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 220351 - 220459
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    ||||||||||||||| |||||||| || ||||| |||  | ||| |  |||||||  | ||  || ||||||||| ||||||| ||||||||||||| ||    
T  220351 gtggttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccctgccaactgagcta 220450  T
Q  116 tgctcacgg 124  Q
    |||||||||    
T  220451 tgctcacgg 220459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 689506 - 689614
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    ||||||||||||||| |||||||| || ||||| |||  | ||| |  |||||||  | ||  || ||||||||| ||||||| ||||||||||||| ||    
T  689506 gtggttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccctgccaactgagcta 689605  T
Q  116 tgctcacgg 124  Q
    |||||||||    
T  689606 tgctcacgg 689614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 733974 - 734082
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    ||||||||||||||| |||||||| || ||||| |||  | ||| |  |||||||  | ||  || ||||||||| ||||||| ||||||||||||| ||    
T  733974 gtggttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccctgccaactgagcta 734073  T
Q  116 tgctcacgg 124  Q
    |||||||||    
T  734074 tgctcacgg 734082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 857870 - 857978
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    ||||||||||||||| |||||||| || ||||| |||  | ||| |  |||||||  | ||  || ||||||||| ||||||| ||||||||||||| ||    
T  857870 gtggttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccctgccaactgagcta 857969  T
Q  116 tgctcacgg 124  Q
    |||||||||    
T  857970 tgctcacgg 857978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 12986515 - 12986471
Alignment:
Q  79 ctacatataacaatgcatgtacctgccaactgagttatgctcacg 123  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||||    
T  12986515 ctacatataacaacgcatttacctgccaactgagatatgctcacg 12986471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 216202 - 216244
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||||||||| |||| ||||||||||||| |||||||||||    
T  216202 catataacaatgtatgtccctgccaactgagctatgctcacgg 216244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 692762 - 692804
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||||||||| |||| ||||||||||||| |||||||||||    
T  692762 catataacaatgtatgtccctgccaactgagctatgctcacgg 692804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 696971 - 697013
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||||||||| |||| ||||||||||||| |||||||||||    
T  696971 catataacaatgtatgtccctgccaactgagctatgctcacgg 697013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 729825 - 729867
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||||||||| |||| ||||||||||||| |||||||||||    
T  729825 catataacaatgtatgtccctgccaactgagctatgctcacgg 729867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 853720 - 853762
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||||||||| |||| ||||||||||||| |||||||||||    
T  853720 catataacaatgtatgtccctgccaactgagctatgctcacgg 853762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 18577153 - 18577111
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||    
T  18577153 catataacaatacatgtccctgtcaactgagttatgctcacgg 18577111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 21133567 - 21133617
Alignment:
Q  75 actcctacatataacaatgcat-gtacctgccaactgagttatgctcacgg 124  Q
    |||||| ||||||| ||||||| || |||||||||||||||||||||||||    
T  21133567 actcctgcatataataatgcattgttcctgccaactgagttatgctcacgg 21133617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 39432383 - 39432425
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||| ||||||| ||||||||||||| |||||||||||    
T  39432383 catataacattgcatgtccctgccaactgagctatgctcacgg 39432425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 41531213 - 41531319
Alignment:
Q  18 ggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagttatg 117  Q
    |||||||||||| ||||||||| || |||||  |  || ||| ||||||||||  |||| | |||||||||||||| ||||   ||| ||||||| ||||    
T  41531213 ggttagaattcaattttttcaaggtgaataagggagatgtccggagttcgaactctaacccatacatataacaatgtatgtcgttgctaactgagctatg 41531312  T
Q  118 ctcacgg 124  Q
    |||||||    
T  41531313 ctcacgg 41531319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 42711266 - 42711160
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    ||||||||||||||| |||||||| | |||||| ||| || ||| |||||| ||   | || ||| |||||||||||| |||| ||||| ||| ||||||    
T  42711266 gtggttagaattcacatttttcaaggcaaataagtgggatgtccggagttcaaatcctgacccctgcatataacaatgtatgttcctgcaaaccgagtta 42711167  T
Q  116 tgctcac 122  Q
    || ||||    
T  42711166 tgttcac 42711160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 25470902 - 25470943
Alignment:
Q  83 atataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||| ||||||||| |||| ||||||||||||||||||||    
T  25470902 atataataatgcatgttcctgtcaactgagttatgctcacgg 25470943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 14011093 - 14011133
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcac 122  Q
    ||||||||||||||||| ||||||||||||  |||||||||    
T  14011093 catataacaatgcatgtccctgccaactgaactatgctcac 14011133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 26657896 - 26657856
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcac 122  Q
    ||||||||||||||||| ||| ||||||||| |||||||||    
T  26657896 catataacaatgcatgtccctaccaactgagctatgctcac 26657856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 41793022 - 41793069
Alignment:
Q  76 ctcctacatataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||| ||||||||||||||||| |||||||| |||| |||||||||||    
T  41793022 ctcctgcatataacaatgcatgt-cctgccaattgagctatgctcacgg 41793069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 11246549 - 11246591
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  11246549 catataacaatgcatgtccctgccaactgagctatgctcacgg 11246591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 17557074 - 17557028
Alignment:
Q  78 cctacatataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||||||||||||||||||  ||||||||||||||| ||||||||    
T  17557074 cctacatataacaatgcatgtctctgccaactgagttaggctcacgg 17557028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 38040363 - 38040267
Alignment:
Q  24 aattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagttatgctca 121  Q
    ||||||| ||||||||  | ||||| ||| || ||| |||||||||| |  || ||| ||||||||||||||||| ||||||||||||| ||||||||    
T  38040363 aattcacctttttcaagatgaataagtgggatgtcc-gagttcgaacctcgacccctgcatataacaatgcatgtccctgccaactgagctatgctca 38040267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 40250225 - 40250274
Alignment:
Q  75 actcctacatataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||| |||||||||||||||||  |||||||||||| |||||||||||    
T  40250225 actcctgcatataacaatgcatgttactgccaactgagctatgctcacgg 40250274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 3535925 - 3536033
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    ||||||||||||||||||||| || || ||||| |||  | ||| | ||||||||     |||||  |||||||||||||||| ||||||||||||  ||    
T  3535925 gtggttagaattcactttttttaaggtgaataagtggggtgtccggggttcgaaccccggctcctgtatataacaatgcatgtccctgccaactgaacta 3536024  T
Q  116 tgctcacgg 124  Q
    |||||||||    
T  3536025 tgctcacgg 3536033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 35813232 - 35813339
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    |||| |||||||||| |||||||||| || ||| |||  | ||| | |||||||| | | | ||| ||||||||||||||||| |||| |||||||| ||    
T  35813232 gtggctagaattcacctttttcaaaggaa-taagtggggtgtcctgggttcgaacctgagcccctgcatataacaatgcatgtccctgtcaactgagcta 35813330  T
Q  116 tgctcacgg 124  Q
    |||||||||    
T  35813331 tgctcacgg 35813339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 3102175 - 3102225
Alignment:
Q  75 actcctacatataacaatgca-tgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||||||||| ||| ||||||||||||| |||||| ||||    
T  3102175 actcctacatataacaatgcattgtccctgccaactgagctatgcttacgg 3102225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 25660952 - 25660910
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    ||||||||||||||| | ||||||||||||| |||||||||||    
T  25660952 catataacaatgcatatccctgccaactgagctatgctcacgg 25660910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 17178271 - 17178320
Alignment:
Q  76 ctcctacatataacaatgcatgtacctgccaactgagttatgctcacgga 125  Q
    |||||| |||||||||||||||| |||| |||||||| |||||| |||||    
T  17178271 ctcctatatataacaatgcatgtccctgtcaactgagctatgctaacgga 17178320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 22867040 - 22867088
Alignment:
Q  75 actcctacatataacaatgcatgtacctgccaactgagttatgctcacg 123  Q
    |||||| ||||||| ||||||||| | || |||||||||||||||||||    
T  22867040 actcctgcatataataatgcatgtccttgtcaactgagttatgctcacg 22867088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 67267 - 67162
Alignment:
Q  16 gtggttagaattcacttttttcaaagtaaataaatggtatatccagagttcgaacattaactcctacatataacaatgcatgtacctgccaactgagtta 115  Q
    |||| ||||||||||||||||||| || | ||| |||  | ||||| ||||||||   | | ||||||||||||||||||| | ||| ||||||||| ||    
T  67267 gtggctagaattcacttttttcaaggtgattaagtggggtgtccagggttcgaaccccagcccctacatataacaatgcatatccctcccaactgagcta 67168  T
Q  116 tgctca 121  Q
    ||||||    
T  67167 tgctca 67162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1808 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1808
Description:

Target: scaffold1808; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 888 - 930
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgctcacgg 124  Q
    |||||||||||| |||| |||| ||||||||||||||||||||    
T  888 catataacaatgtatgtccctgacaactgagttatgctcacgg 930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1343 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1343
Description:

Target: scaffold1343; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 932 - 969
Alignment:
Q  82 catataacaatgcatgtacctgccaactgagttatgct 119  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  932 catataacaatgcatgttcttgccaactgagttatgct 969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University