View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9999_low_3 (Length: 452)
Name: NF9999_low_3
Description: NF9999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9999_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 22 - 360
Target Start/End: Original strand, 43518752 - 43519087
Alignment:
| Q |
22 |
ggtaggtgagatttggaagacttaaagagaggaagaatcattttgcatatgcaagaaaatgatatgatgaaagaataagacggaaaagaatgaccgagta |
121 |
Q |
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| T |
43518752 |
ggtaggtgagatttggaagacttaaagagaggaagaatcattttgcatatgcaagaaaatgatatgatgaaagaataagacggaaaagaatgaccgagta |
43518851 |
T |
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| Q |
122 |
tctagtga-----------------tttatatgggaagaggaagggaccatattcacaacaaaagaatctatttgattgtttgttatctattttaatcat |
204 |
Q |
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| T |
43518852 |
tctagtgattgttggtaattggtgatttatatgggaagaggaagggaccatattcacaacacaagaatctatttgattgtttgttatctattttaatcat |
43518951 |
T |
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| Q |
205 |
gaaaaatctaattgatgccaaatcagaaggaaaaaacaaaccttttatagtgatacagaccttatatagttttttgctattttgaatctatccataattg |
304 |
Q |
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| T |
43518952 |
gaaaaatctaattgatgccaaatcagaaggaaaaaacaaaccttatatag--------------------tttttgctattttgaatctatccataattg |
43519031 |
T |
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| Q |
305 |
gctaaaatgggtaaattaagaccatccatagatcatttgtcttttacgcaatattc |
360 |
Q |
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| T |
43519032 |
gctaaaatgggtaaattaagaccatccatagatcatttgtcttttacgcaatattc |
43519087 |
T |
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