View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9999_low_4 (Length: 435)
Name: NF9999_low_4
Description: NF9999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9999_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 416
Target Start/End: Original strand, 6326525 - 6326949
Alignment:
| Q |
11 |
cacagaccttaactaaattttggcagtttgatgtgattttctctggtttgagcacatcatggcctaagggactcaccggtttgagcccggttcggtttac |
110 |
Q |
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| T |
6326525 |
cacagaccttaactaaattttggcagtttgatgtgattttctctggtttgagcacatcatgacctaagggtctcaccggtttgagcccggtccggtttac |
6326624 |
T |
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| Q |
111 |
aaaacatcaatgttttaataaacatgttagaacatcacaaaacagaaccaattaagttctgttttctactataagtttcagagattgaatcaaaaccagc |
210 |
Q |
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| T |
6326625 |
aaaacatcaacgttttaataaacatgttagaacatcacaaaacagaaccaattaagttctgttttctactataagtttcagagattgaatcaaaacctgc |
6326724 |
T |
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| Q |
211 |
atatctaaaagaacacaggtcgaat-------------aacattaaaagataactat--------ttatagcaatacttgttagacaaagaaactaaaca |
289 |
Q |
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| T |
6326725 |
atatctaaaagaatacaggtcgaataacatgtttgatcaacattaaaagataactatcatagttgttatagcaataattgttagacaaagaaactaaaca |
6326824 |
T |
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| Q |
290 |
acatgctgaaaaagtaaagatactactactataaactcaaacataaaacacttttttcttagttcttgagaatgaaaagtgaaaatactagttctaagct |
389 |
Q |
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| T |
6326825 |
acatgctgaaaaagtaaagatactaatac--taaactaaaaaataaaacacttttttcttagttcttgagaatgaaaagtgaaaatactagttctaagct |
6326922 |
T |
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| Q |
390 |
acataacataatagggacacatttcgt |
416 |
Q |
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| T |
6326923 |
acacaacataatagggacacatttcgt |
6326949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 6317317 - 6317421
Alignment:
| Q |
32 |
ggcagtttgat-gtgattttctctggtttgagcacatcatggcctaagggactcaccggtttgagcccggttcggtttacaaaacatcaatgttttaata |
130 |
Q |
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| T |
6317317 |
ggcagtttgattgtgattttctctggtttgagcgcatcatgacccaagggtttcaccagtttg-----------gtatataaaacatcaatgttttaata |
6317405 |
T |
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| Q |
131 |
aacatgttagaacatc |
146 |
Q |
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| T |
6317406 |
aacatgttagaacatc |
6317421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 6317483 - 6317521
Alignment:
| Q |
189 |
cagagattgaatcaaaaccagcatatctaaaagaacaca |
227 |
Q |
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| T |
6317483 |
cagagattgaatcaaaacctgcatatctaaaagaacaca |
6317521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 6317650 - 6317704
Alignment:
| Q |
362 |
tgaaaagtgaaaatactagttctaagctacataacataatagggacacatttcgt |
416 |
Q |
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| T |
6317650 |
tgaaaagtgaaaatactagttcaaaactacataataaaatggggacacatatcgt |
6317704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 301 - 416
Target Start/End: Original strand, 39832535 - 39832648
Alignment:
| Q |
301 |
aagtaaagatactactactataaactcaaacataaaacacttttttcttagttcttgagaatgaaaagtgaaaatactagttctaagctacataacataa |
400 |
Q |
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| T |
39832535 |
aagtaaagatactacttcta--aactcaaacataaaacacttttttcttagttcttgagaatgaaaagtgaaaatactacttctaagctacataacataa |
39832632 |
T |
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| Q |
401 |
tagggacacatttcgt |
416 |
Q |
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||| |||||| |||| |
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| T |
39832633 |
aaggaacacatctcgt |
39832648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 39832379 - 39832427
Alignment:
| Q |
190 |
agagattgaatcaaaaccagcatatctaaaagaacacaggtcgaataac |
238 |
Q |
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|||||||||||||||||| ||||||||||||||||||| || ||||||| |
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| T |
39832379 |
agagattgaatcaaaacctgcatatctaaaagaacacaagtggaataac |
39832427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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