View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9999_low_5 (Length: 341)

Name: NF9999_low_5
Description: NF9999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9999_low_5
NF9999_low_5
[»] chr8 (3 HSPs)
chr8 (1-336)||(32840374-32840703)
chr8 (13-71)||(34482601-34482660)
chr8 (5-52)||(14015926-14015974)
[»] chr7 (1 HSPs)
chr7 (1-71)||(41100350-41100421)
[»] chr5 (1 HSPs)
chr5 (1-71)||(42273404-42273475)
[»] scaffold0144 (1 HSPs)
scaffold0144 (3-67)||(5572-5637)
[»] chr3 (3 HSPs)
chr3 (1-71)||(1114244-1114315)
chr3 (8-68)||(11283956-11284017)
chr3 (1-52)||(245682-245734)
[»] chr6 (1 HSPs)
chr6 (4-71)||(31432741-31432809)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 32840374 - 32840703
Alignment:
Q  1 aagcaagctatgaaatgtttctaataat-aatgaagtgtgattgaattgttatttggtcatatatcatggtannnnnnnnnnnnnnnnaaaatctcaaat 99  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||                ||||||||||||    
T  32840374 aagcaagctatgaaatgtttctaataatgaatgaagtgtgattgaattgttatatggtcatatatcatggtattttttcaatttttttaaaatctcaaat 32840473  T
Q  100 atatattgcttgtaatatagacctagtactccataaccttccttcccctccaaaattcccatcccaaacagaccctacaatttctcacatagatcaagtg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  32840474 atatattgcttgtaatatagacctagtactccataaccttccttcccctccaaaattcccatcccaaacagaccctacaatttctcac--agatcaagtg 32840571  T
Q  200 acatatgcacaagaccatcaacggtaacacatcaataagatcattaacactatgtggaaagtaaaatgcactaattnnnnnnnnnnnngagtattaagat 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||     |    
T  32840572 acatatgcacaagaccatcaacggtaacacatcaataagatcattaacactatgtggaaagtaaaatgcactaattaaaaaagaaaaagagtat-----t 32840666  T
Q  300 aagatggatggaggtccatggtttaatctctgctgct 336  Q
    |||||||||||||||||||||||||||| ||||||||    
T  32840667 aagatggatggaggtccatggtttaatccctgctgct 32840703  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 34482660 - 34482601
Alignment:
Q  13 aaatgtttctaataat-aatgaagtgtgattgaattgttatttggtcatatatcatggta 71  Q
    |||||||||||| ||| |||||||||||||||||||| |||||| |||||||||||||||    
T  34482660 aaatgtttctaaaaatgaatgaagtgtgattgaattgctatttgatcatatatcatggta 34482601  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 14015974 - 14015926
Alignment:
Q  5 aagctatgaaatgtttctaataat-aatgaagtgtgattgaattgttat 52  Q
    ||||||| |||||||||||| ||| |||||||| |||||||||||||||    
T  14015974 aagctataaaatgtttctaaaaatgaatgaagtatgattgaattgttat 14015926  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 41100421 - 41100350
Alignment:
Q  1 aagcaagctatgaaatgtttctaataat-aatgaagtgtgattgaattgttatttggtcatatatcatggta 71  Q
    ||||||||||| |||||||||||| ||| |||||||||||||||||||||| | || |||||||||||||||    
T  41100421 aagcaagctataaaatgtttctaaaaatgaatgaagtgtgattgaattgttctatgatcatatatcatggta 41100350  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 42273404 - 42273475
Alignment:
Q  1 aagcaagctatgaaatgtttctaataat-aatgaagtgtgattgaattgttatttggtcatatatcatggta 71  Q
    ||||||||||  |||||||||||| ||| |||||||||||||||||||||||| || |||||||| ||||||    
T  42273404 aagcaagctacaaaatgtttctaaaaatgaatgaagtgtgattgaattgttatatgatcatatattatggta 42273475  T

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Target: scaffold0144 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 5637 - 5572
Alignment:
Q  3 gcaagctatgaaatgtttctaataat-aatgaagtgtgattgaattgttatttggtcatatatcat 67  Q
    ||||||||| |||||||||||| ||| |||||||||||||||||||||||| || | |||||||||    
T  5637 gcaagctataaaatgtttctaaaaattaatgaagtgtgattgaattgttatatgattatatatcat 5572  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 1114244 - 1114315
Alignment:
Q  1 aagcaagctatgaaatgtttctaataat-aatgaagtgtgattgaattgttatttggtcatatatcatggta 71  Q
    ||||||||||| |||||||||| | ||| ||||||  |||||||||||||||| || |||||||| ||||||    
T  1114244 aagcaagctataaaatgtttctgaaaattaatgaacagtgattgaattgttatgtgatcatatataatggta 1114315  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 11283956 - 11284017
Alignment:
Q  8 ctatgaaatgtttctaataat-aatgaagtgtgattgaattgttatttggtcatatatcatg 68  Q
    |||| |||||||||||| ||| |||||||||| |||||||| |||| || ||||||||||||    
T  11283956 ctataaaatgtttctaaaaatgaatgaagtgtaattgaatttttatatgatcatatatcatg 11284017  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 245682 - 245734
Alignment:
Q  1 aagcaagctatgaaatgtttctaataat-aatgaagtgtgattgaattgttat 52  Q
    ||||||||||| |||| ||| ||| ||| ||||||||||||||||||||||||    
T  245682 aagcaagctataaaatatttttaaaaatgaatgaagtgtgattgaattgttat 245734  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 31432741 - 31432809
Alignment:
Q  4 caagctatgaaatgtttctaataat-aatgaagtgtgattgaattgttatttggtcatatatcatggta 71  Q
    |||||||| || ||||||||| | | |||||||||||||||||||||||| ||   |||||||||||||    
T  31432741 caagctataaagtgtttctaaaattgaatgaagtgtgattgaattgttatatgacaatatatcatggta 31432809  T

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