View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: P11_low_1 (Length: 341)
Name: P11_low_1
Description: P11
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] P11_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 29375431 - 29375123
Alignment:
| Q |
16 |
aattctacattatgccaagttaaacatgctcgagacacaa-gtgatttacaaagttcaatttaatcatgaaacatttcctatttgatatcatggttttac |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| | |
|
|
| T |
29375431 |
aattctacattatgccaagttaaacatgctcaagacacaaagtgatttacaaagttcattttg-tcacgaaacatttcctatttgatatcatggtt--ag |
29375335 |
T |
|
| Q |
115 |
tgtaccttggttaaaagaaacaaagattcagaatgatcagcacttaatccatgtaaagtggaccccttagatggcatcaaagatgaaacttgtgcctttt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29375334 |
tgtaccttggttaaaagaaacaaagattcagaatgatcagcacttaatccatgtaaagtgcaccccttagatggtatcaaagatgaaacttgtgcctttt |
29375235 |
T |
|
| Q |
215 |
tatcttgccatatgtgccttttccatgatggttttgatttactgttatattcataaagatctccagtagaactgtatacatcaccacattcatcagttat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29375234 |
tatcttgccatatgtgccttttccatgatggttttgatttactgttatattcataaagatctccagtagaactgtatacatcaccacattcatcagttat |
29375135 |
T |
|
| Q |
315 |
agttgttagtat |
326 |
Q |
| |
|
|||||||||||| |
|
|
| T |
29375134 |
agttgttagtat |
29375123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University