View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: P11_low_2 (Length: 243)
Name: P11_low_2
Description: P11
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] P11_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 28153174 - 28152945
Alignment:
| Q |
1 |
cacaacggaattcattcttttctggactgctaagttaagctggtttggggagagtgaataaacccattttggttgatacttaggatcatcattaaatata |
100 |
Q |
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| T |
28153174 |
cacaacggaattcattcttttttggactgctaaattaagctggtttggggagagtgaataaacccattttggttgatacttaggatcatcattaaatata |
28153075 |
T |
|
| Q |
101 |
ttgtgtcctcgaacagtaatattgtgtgattttgcaaactgtagcatttgatcagcttggaaatagttatcttttcctggtgcgtattcatttgtgtacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28153074 |
ttgtgtcctcgaacagtaatattgtgtgattttgcaaactgtagcatttgatcagcttggaaatagttatcttttcctggtgcgtattcatttgtgtacc |
28152975 |
T |
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| Q |
201 |
atttcatttcattttcaaatgttgtaactg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28152974 |
atttcatttcattttcaaatgttgtaactg |
28152945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 8023507 - 8023736
Alignment:
| Q |
1 |
cacaacggaattcattcttttctggactgctaagttaagctggtttggggagagtgaataaacccattttggttgatacttaggatcatcattaaatata |
100 |
Q |
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||||| |||||||| ||||| | |||||| ||||||||||| || || || ||| ||||||| || ||||| || | ||||||||| ||||||| |
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| T |
8023507 |
cacaatggaattcacccttttttcgactgcatcgttaagctggtccggtgacagcgaagaaacccaattaggttggtattgaggatcatcccaaaatata |
8023606 |
T |
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| Q |
101 |
ttgtgtcctcgaacagtaatattgtgtgattttgcaaactgtagcatttgatcagcttggaaatagttatcttttcctggtgcgtattcatttgtgtacc |
200 |
Q |
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| T |
8023607 |
ttgtgacctctaacagcaataccttgtttctctgcaaaccctagcattgcatcagcgtcaaagtagttatctttgccttgtgcatattcattcgtgtacc |
8023706 |
T |
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| Q |
201 |
atttcatttcattttcaaatgttgtaactg |
230 |
Q |
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| T |
8023707 |
acttcatttcattttcaaatgtggtaactg |
8023736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 221
Target Start/End: Original strand, 21543896 - 21544023
Alignment:
| Q |
94 |
aaatatattgtgtcctcgaacagtaatattgtgtgattttgcaaactgtagcatttgatcagcttggaaatagttatcttttcctggtgcgtattcattt |
193 |
Q |
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|||||||||||| |||| ||||| |||| |||| ||||||| || ||||||| ||| |||| || |||||||| || ||| ||| |||||||| |
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| T |
21543896 |
aaatatattgtggcctctaacagcaataccgtgtttttttgcataccgtagcatcacatcggcttcaaagtagttatccttgccttgtgtatattcattc |
21543995 |
T |
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| Q |
194 |
gtgtaccatttcatttcattttcaaatg |
221 |
Q |
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|||||||| ||||||||||||||||||| |
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| T |
21543996 |
gtgtaccacttcatttcattttcaaatg |
21544023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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