View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: P12_high_8 (Length: 437)
Name: P12_high_8
Description: P12
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] P12_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 147 - 421
Target Start/End: Complemental strand, 40432614 - 40432344
Alignment:
| Q |
147 |
ataaatttatgcatgatagatagaaaaaccaaaaacatgtaacatcgtctcacattcatcacatcaaataaaatgtgataagttcaaagtttaattttgt |
246 |
Q |
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| T |
40432614 |
ataaatttatgcatgataga----aaaaccaaaaacatgtaacaacgtctcacattcatcacatcaaataaaatgtggtaagttcaaagtttaattttgt |
40432519 |
T |
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| Q |
247 |
tcatgcagctggtaaacaatgcagcaagtattttattactataagccaaagtcccacagccccaatgaatggcattccaacacacacagttgaaatatca |
346 |
Q |
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| T |
40432518 |
tcatgcagctggtaaacaatgcagcaagtattttattacgataagccaaagtcccacagccccaatgaatggcattccaacacacacagttgaaatatca |
40432419 |
T |
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| Q |
347 |
aatacatgtttgagaggatgcaacatttttgacattcatgttgcttgtggcaagttcagctctgtacgtcttatc |
421 |
Q |
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| T |
40432418 |
aatacatgtttgagaggatgcaacatttttgacattcatgttgcttgtggcaagttcggctctgtacgtcttatc |
40432344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 40433467 - 40433337
Alignment:
| Q |
9 |
gattatactaaggatgttgctgctttgggtccggattcgcagccagaagctaattacacactccttaatcatggaaaatatggcactcatcaaggtgatt |
108 |
Q |
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| T |
40433467 |
gattatattaaggatgttgctgctttgggtccggattcgcagccagaagctaattacac--tccctaatcatggaaaatatggcactcatcaaggtgatt |
40433370 |
T |
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| Q |
109 |
gtttttacgaataaaactcttaacctttattaa |
141 |
Q |
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| T |
40433369 |
gtttttacgaataaaactcttaacctttattaa |
40433337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 309 - 396
Target Start/End: Complemental strand, 40436070 - 40435983
Alignment:
| Q |
309 |
caatgaatggcattccaacacacacagttgaaatatcaaatacatgtttgagaggatgcaacatttttgacattcatgttgcttgtgg |
396 |
Q |
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|||| ||||||||| ||||| ||| |||||| ||| ||||||||||| ||||||||||||| || | | ||||||||||||||||||| |
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| T |
40436070 |
caattaatggcattacaacatacatagttgagatagcaaatacatgtgtgagaggatgcaaaatctctaacattcatgttgcttgtgg |
40435983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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