View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: P12_low_10 (Length: 415)
Name: P12_low_10
Description: P12
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] P12_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 25639413 - 25639030
Alignment:
| Q |
19 |
cactagccatcatccatatttcgatactccagcctgcctcctcatcggtcgcac-tgcatccttctcatcggttgcgcccgcctcttcctcagtcgctta |
117 |
Q |
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| T |
25639413 |
cactagccatcatccatatttcgatactccggcctgcctcctcatcggtcgcacctgcatccttctcatcggtcgcgcccgcctcttcctcagtcgctta |
25639314 |
T |
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| Q |
118 |
tgctggtgcacctgccactgctgcacatgtaacatacctcacatccacttgaatggatctctccgagtttagactttataacgttgaataaagtatacca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25639313 |
tgctggtgcacctgccactgctgcacatgtaacatacctcacatccacttgaatggatctcgccgagtttagactttataacgttgaataaagtatacca |
25639214 |
T |
|
| Q |
218 |
tatgcaacatagtatttcaatatttcatctatgcggactaagaattaaacaagtaccattttgtgttgcgttagatgggagttaggaatttcgcgtttca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25639213 |
tatgcaacatagtatttcaatatttcatctatgcggactaagaattaaacaagtaccattttgtgttgcgttagatgggagttaggaatttcgcgtttca |
25639114 |
T |
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| Q |
318 |
cttaactttctctgataacttacttacctagcaatggaagaaagatagagtgaaagcatatctcgacaccatcgtccacctcac |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25639113 |
cttaactttctctgataacttacttacctagcaatggaagaaagatagagtgaaagcatatctcgacaccatcgtccacctcac |
25639030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 37398855 - 37398793
Alignment:
| Q |
113 |
gcttatgctggtgcacctgccactgctgcacatgtaacatacctcacatccacttgaatggatc |
176 |
Q |
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| T |
37398855 |
gcttatgccggtgggcctgtcactgctgcacaagtaacatacctcac-tccacttgaatggatc |
37398793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 42403683 - 42403638
Alignment:
| Q |
128 |
cctgccactgctgcacatgtaacatacctcacatccacttgaatgg |
173 |
Q |
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|||||||||||| |||| ||||||||||||| ||| |||||||||| |
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| T |
42403683 |
cctgccactgctccacaggtaacatacctcatatcaacttgaatgg |
42403638 |
T |
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