View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: P12_low_12 (Length: 365)

Name: P12_low_12
Description: P12
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] P12_low_12
P12_low_12
[»] chr5 (6 HSPs)
chr5 (154-357)||(2328107-2328310)
chr5 (7-96)||(2328368-2328457)
chr5 (8-83)||(13661062-13661137)
chr5 (8-73)||(17592570-17592635)
chr5 (8-67)||(7951764-7951823)
chr5 (8-83)||(9828596-9828671)
[»] scaffold0122 (1 HSPs)
scaffold0122 (8-83)||(12267-12342)
[»] chr6 (6 HSPs)
chr6 (8-83)||(6418074-6418149)
chr6 (8-83)||(8743390-8743465)
chr6 (8-67)||(9388564-9388623)
chr6 (8-67)||(23397914-23397973)
chr6 (8-83)||(33488035-33488110)
chr6 (12-56)||(1779830-1779874)
[»] chr8 (7 HSPs)
chr8 (8-73)||(44056838-44056903)
chr8 (8-83)||(12255298-12255373)
chr8 (8-83)||(12260841-12260916)
chr8 (8-83)||(28864266-28864341)
chr8 (8-83)||(11798808-11798883)
chr8 (8-83)||(43653962-43654037)
chr8 (9-83)||(26990586-26990660)
[»] scaffold0015 (1 HSPs)
scaffold0015 (8-56)||(17503-17551)
[»] chr4 (5 HSPs)
chr4 (8-67)||(1859346-1859405)
chr4 (8-83)||(39144607-39144682)
chr4 (8-83)||(43387751-43387826)
chr4 (8-66)||(51536371-51536429)
chr4 (8-73)||(29427693-29427758)
[»] chr3 (10 HSPs)
chr3 (8-67)||(20862400-20862459)
chr3 (8-67)||(25130849-25130908)
chr3 (8-83)||(52059004-52059079)
chr3 (8-56)||(10045043-10045091)
chr3 (8-67)||(17591320-17591379)
chr3 (8-83)||(37728916-37728991)
chr3 (8-67)||(44543985-44544044)
chr3 (8-67)||(50647719-50647778)
chr3 (8-56)||(25916606-25916654)
chr3 (8-56)||(54849567-54849615)
[»] chr2 (10 HSPs)
chr2 (8-83)||(1943778-1943853)
chr2 (8-83)||(16108234-16108309)
chr2 (10-67)||(45151956-45152013)
chr2 (8-67)||(7492047-7492106)
chr2 (8-83)||(16456631-16456706)
chr2 (8-67)||(23789172-23789231)
chr2 (8-83)||(34062423-34062498)
chr2 (8-66)||(45474519-45474577)
chr2 (8-73)||(8841426-8841491)
chr2 (9-66)||(41450721-41450778)
[»] chr1 (6 HSPs)
chr1 (8-66)||(32169730-32169788)
chr1 (8-67)||(13698814-13698873)
chr1 (8-67)||(47263661-47263720)
chr1 (8-77)||(47296331-47296400)
chr1 (8-83)||(10433525-10433601)
chr1 (8-56)||(18237295-18237343)
[»] scaffold0012 (1 HSPs)
scaffold0012 (8-67)||(47843-47902)
[»] chr7 (5 HSPs)
chr7 (8-83)||(9036688-9036763)
chr7 (8-67)||(21295354-21295413)
chr7 (8-67)||(41002929-41002988)
chr7 (8-56)||(5524783-5524831)
chr7 (7-55)||(49110813-49110861)
[»] scaffold0019 (1 HSPs)
scaffold0019 (8-73)||(118049-118113)
[»] scaffold0308 (1 HSPs)
scaffold0308 (8-44)||(14146-14182)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 154 - 357
Target Start/End: Complemental strand, 2328310 - 2328107
Alignment:
Q  154 gaggtcattgccctaagtcttcaaaagaaagcaacgatgaacgacatagcgagtaccgaggttaaggtttgggacgccagcgatcatggaaggtatcacc 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2328310 gaggtcattgccctaagtcttcaaaagaaagcaacgatgaacgacatagcgagtaccgaggttaaggtttgggacgccagcgatcatggaaggtatcacc 2328211  T
Q  254 tagttatcactcttcttcaatgttgttgtttatctctcttgtatattttatcttaatatatatcatgatgattctcaatttttgtcgacaattattagta 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2328210 tagttatcactcttcttcaatgttgttgtttatctctcttgtatattttatcttaatatatatcatgatgattctcaatttttgtcgacaattattagta 2328111  T
Q  354 ttat 357  Q
    ||||    
T  2328110 ttat 2328107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 2328457 - 2328368
Alignment:
Q  7 tcaatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttatagtaaatgggattg 96  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2328457 tcaatagtgattactaacaactttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttatagtaaatgggattg 2328368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 13661062 - 13661137
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    ||||||||||||| |||| ||||||| |||||||||  ||||| ||||   ||||||||||||||||||| |||||    
T  13661062 caatagtgattacaaacaactttaatacaaatatccgctttcttaatttccgtgattttaataaaaaggtcttata 13661137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 17592635 - 17592570
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaa 73  Q
    ||||||||||||| |||| ||||||| |||||||||| ||||| |||||  |||||||||| ||||    
T  17592635 caatagtgattacaaacaactttaatacaaatatccactttcttaattcccgtgattttaacaaaa 17592570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 7951764 - 7951823
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttta 67  Q
    ||||||||||||| |||| ||||||| |||||||||| ||||| |||||  |||||||||    
T  7951764 caatagtgattacaaacaactttaatacaaatatccactttcttaattcccgtgatttta 7951823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 9828596 - 9828671
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    ||||||||||||| |||| ||||||| |||||||||  ||||| |||||  |||||||||| |||| ||| |||||    
T  9828596 caatagtgattacaaacaactttaatacaaatatccgctttcttaattcccgtgattttaacaaaagggtcttata 9828671  T

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Target: scaffold0122 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 12267 - 12342
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    ||||||||||||| |||| ||||||| |||||||||| ||||| |||||  |||||||||| |||| |||||||||    
T  12267 caatagtgattacaaacaactttaatacaaatatccactttcttaattcccgtgattttaacaaaagggttttata 12342  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 6418074 - 6418149
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    ||||||||||||| |||| ||||||| ||||||||| |||||| |||||  |||||||||| |||||||| |||||    
T  6418074 caatagtgattacaaacaactttaatacaaatatccgttttcttaattcccgtgattttaacaaaaaggtcttata 6418149  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 8743390 - 8743465
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    ||||||||||||| |||| ||||||| |||||||||  ||||| |||||  ||||||||| ||||| ||| |||||    
T  8743390 caatagtgattacaaacaactttaatacaaatatccgctttcttaattcccgtgattttagtaaaagggtcttata 8743465  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 9388623 - 9388564
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttta 67  Q
    ||||||||||||| |||| ||||||| ||||||||| |||||| |||||  |||||||||    
T  9388623 caatagtgattacaaacaactttaatacaaatatccgttttcttaattcccgtgatttta 9388564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 23397973 - 23397914
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttta 67  Q
    ||||||||||||| |||| ||||||| ||||||| |||||||| |||||  |||||||||    
T  23397973 caatagtgattacaaacaactttaatacaaatattcattttcttaattcccgtgatttta 23397914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 33488035 - 33488110
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    ||||||||||||| |||| ||||||| |||||||||| | ||| |||||  |||||||| | |||||||| |||||    
T  33488035 caatagtgattacaaacaactttaatacaaatatccactatcttaattcccgtgattttgacaaaaaggtcttata 33488110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 1779874 - 1779830
Alignment:
Q  12 agtgattactaacatctttaatgcaaatatccattttctaaattc 56  Q
    ||||||||| |||| ||||||| |||||||||||||||| |||||    
T  1779874 agtgattacaaacaactttaatacaaatatccattttcttaattc 1779830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 44056903 - 44056838
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaa 73  Q
    ||||||||||||| |||| ||||||| ||||||| |||||||| ||||| ||||||||||| ||||    
T  44056903 caatagtgattacaaacaactttaatacaaatattcattttcttaattcttgtgattttaacaaaa 44056838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 12255298 - 12255373
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    ||||||||||||| |||| ||||||| |||||||||| ||||| |||||  |||||||||  |||| |||||||||    
T  12255298 caatagtgattacaaacaactttaatacaaatatccactttcttaattcccgtgattttagcaaaagggttttata 12255373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 12260841 - 12260916
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    ||||||||||||| |||| ||||||| |||||||||| ||||| |||||  |||||||||  |||| |||||||||    
T  12260841 caatagtgattacaaacaactttaatacaaatatccactttcttaattcccgtgattttagcaaaagggttttata 12260916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 28864341 - 28864266
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    ||||||||||||| |||| ||||||| |||||||||| ||||| ||||| | ||||||||| |||| ||| |||||    
T  28864341 caatagtgattacaaacaactttaatacaaatatccactttcttaattcctctgattttaacaaaagggtcttata 28864266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 11798808 - 11798883
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    ||||||||||||| |||| ||||||| ||||||||| |||||| |||||   ||||||||| |||| ||| |||||    
T  11798808 caatagtgattacaaacaactttaatacaaatatccgttttcttaattcccatgattttaacaaaagggtcttata 11798883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 43654037 - 43653962
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    ||||||||||||| |||| ||||||| ||||||| || ||||| |||||  |||||||||| |||| ||| |||||    
T  43654037 caatagtgattacaaacaactttaatacaaatattcactttcttaattcccgtgattttaacaaaagggtcttata 43653962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 26990660 - 26990586
Alignment:
Q  9 aatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    |||||||||||| |||| ||||||||||||||| |  ||||| |||||  || |||||| ||||||||| |||||    
T  26990660 aatagtgattacaaacaactttaatgcaaatattcgctttcttaattcccgtaattttagtaaaaaggtcttata 26990586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 17551 - 17503
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattc 56  Q
    ||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  17551 caatagtgattacaaacaactttaatgcaaatatccattttcttaattc 17503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 1859346 - 1859405
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttta 67  Q
    ||||||||||||| |||| ||||||| ||||||||| |||||| ||||| ||||||||||    
T  1859346 caatagtgattacaaacaactttaatacaaatatccgttttcttaattcctgtgatttta 1859405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 39144607 - 39144682
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    ||||||||||||| |||| ||||||| |||||||||  ||||| |||||  |||||||||  |||||||| |||||    
T  39144607 caatagtgattacaaacaactttaatacaaatatccgctttcttaattcccgtgattttagcaaaaaggtcttata 39144682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 43387826 - 43387751
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    ||||||||||||| |||| ||||||| |||||||||| | ||| |||||  |||||||| |||||| ||| |||||    
T  43387826 caatagtgattacaaacaactttaatacaaatatccactatcttaattcccgtgattttgataaaagggtcttata 43387751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 51536371 - 51536429
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttt 66  Q
    ||||||||||||| |||| ||||||| |||||||||| | ||| ||||| |||||||||    
T  51536371 caatagtgattacaaacaactttaatacaaatatccactatcttaattcctgtgatttt 51536429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 29427693 - 29427758
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaa 73  Q
    ||||||||||||| |||| ||||||| |||||||||| | ||| |||||  |||||||||| ||||    
T  29427693 caatagtgattacaaacaactttaatacaaatatccactatcttaattcccgtgattttaacaaaa 29427758  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 20862400 - 20862459
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttta 67  Q
    ||||||||||||| |||| ||||||| |||||||||||||||| |||||  |||||||||    
T  20862400 caatagtgattacaaacaactttaatacaaatatccattttcttaattcccgtgatttta 20862459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 25130849 - 25130908
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttta 67  Q
    ||||||||||||| |||| ||||||| |||||||||||||||| |||||  |||||||||    
T  25130849 caatagtgattacaaacaactttaatacaaatatccattttcttaattcccgtgatttta 25130908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 52059079 - 52059004
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    ||||||||||||| |||| ||||||| ||||||||| |||||| |||||  |||||||||| |||| ||| |||||    
T  52059079 caatagtgattacaaacaactttaatacaaatatccgttttcttaattcccgtgattttaacaaaagggtcttata 52059004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 10045043 - 10045091
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattc 56  Q
    ||||||||||||| |||| |||||||||||||||||| ||||| |||||    
T  10045043 caatagtgattacaaacagctttaatgcaaatatccactttcttaattc 10045091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 17591379 - 17591320
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttta 67  Q
    ||||||||||||| |||| ||||||| ||||||||| |||||| |||||  |||||||||    
T  17591379 caatagtgattacaaacaactttaatacaaatatccgttttcttaattcccgtgatttta 17591320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 37728916 - 37728991
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    ||||||||||||| |||| ||||||| ||||||| || ||||| |||||  |||||||||| |||| ||| |||||    
T  37728916 caatagtgattacaaacaactttaatacaaatattcactttcttaattcccgtgattttaacaaaagggtcttata 37728991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 44543985 - 44544044
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttta 67  Q
    ||||||||||||| |||| ||||||| |||||||||| ||||| |||||  |||||||||    
T  44543985 caatagtgattacaaacaactttaatacaaatatccactttcttaattcccgtgatttta 44544044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 50647778 - 50647719
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttta 67  Q
    ||||||||||||| |||| ||||||| ||||||||| |||||| |||||  |||||||||    
T  50647778 caatagtgattacaaacaactttaatacaaatatccgttttcttaattcccgtgatttta 50647719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 25916606 - 25916654
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattc 56  Q
    ||||||||||||| |||| ||||||| |||||||||| ||||| |||||    
T  25916606 caatagtgattacaaacaactttaatacaaatatccactttcttaattc 25916654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 54849567 - 54849615
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattc 56  Q
    ||||||||||||| |||| |||||||| ||||||||| ||||| |||||    
T  54849567 caatagtgattacaaacaactttaatgtaaatatccactttcttaattc 54849615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 1943778 - 1943853
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    ||||||||||||| |||| ||||||| |||||||||| | ||| |||||| |||||||| | |||| |||||||||    
T  1943778 caatagtgattacaaacaactttaatacaaatatccactatcttaattcacgtgattttgacaaaagggttttata 1943853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 16108309 - 16108234
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    ||||||||||||| |||| ||||||| |||||||||| ||||| |||||  |||||||||| |||| ||| |||||    
T  16108309 caatagtgattacaaacaactttaatacaaatatccactttcttaattcccgtgattttaacaaaagggtcttata 16108234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 45151956 - 45152013
Alignment:
Q  10 atagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttta 67  Q
    ||||||||||| |||| ||||||| |||||||||| ||| | ||||||||||||||||    
T  45151956 atagtgattacaaacaactttaatacaaatatccacttttttaattcatgtgatttta 45152013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 7492047 - 7492106
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttta 67  Q
    ||||||||||||| |||| ||||||| ||||||| || ||||| ||||| ||||||||||    
T  7492047 caatagtgattacaaacaactttaatacaaatattcactttcttaattcctgtgatttta 7492106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 16456706 - 16456631
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    ||||||||||||| |||| ||||||| |||||||||  ||||| |||||  ||||||||| ||||| ||| |||||    
T  16456706 caatagtgattacaaacaactttaatacaaatatccgctttcttaattcccgtgattttagtaaaagggtcttata 16456631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 23789172 - 23789231
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttta 67  Q
    ||||||||||||| |||| ||||||| |||||||||| ||||| |||||  |||||||||    
T  23789172 caatagtgattacaaacaactttaatacaaatatccactttcttaattcccgtgatttta 23789231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 34062498 - 34062423
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    ||||||||||||| |||| ||||||| |||||||||| | ||| |||||  |||||||||  |||||||| |||||    
T  34062498 caatagtgattacaaacaactttaatacaaatatccactatcttaattcccgtgattttagcaaaaaggtcttata 34062423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 45474519 - 45474577
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttt 66  Q
    ||||||||||||| |||| ||||||| |||||||||| | ||| |||||| ||||||||    
T  45474519 caatagtgattacaaacaactttaatacaaatatccactatcttaattcacgtgatttt 45474577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 8841491 - 8841426
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaa 73  Q
    ||||||||||||| |||| ||||||| |||||||||  ||||| |||||  ||||||||| |||||    
T  8841491 caatagtgattacaaacaactttaatacaaatatccgctttcttaattcccgtgattttagtaaaa 8841426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 41450721 - 41450778
Alignment:
Q  9 aatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttt 66  Q
    |||||||||||| |||| ||||||| |||||||||| | ||| ||||| |||||||||    
T  41450721 aatagtgattacaaacaactttaatacaaatatccactatcttaattcctgtgatttt 41450778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 32169788 - 32169730
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttt 66  Q
    ||||||||||||| |||| ||||||| |||||||||| | ||| |||||||||||||||    
T  32169788 caatagtgattacaaacaactttaatacaaatatccactatcttaattcatgtgatttt 32169730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 13698814 - 13698873
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttta 67  Q
    ||||||||||||| |||| ||||||| |||||||||| ||||| |||||  |||||||||    
T  13698814 caatagtgattacaaacaactttaatacaaatatccactttcttaattctcgtgatttta 13698873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 47263661 - 47263720
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttta 67  Q
    ||||||||||||| |||| ||||||| |||||||||| ||||| |||||  |||||||||    
T  47263661 caatagtgattacaaacaactttaatacaaatatccactttcttaattctcgtgatttta 47263720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 47296400 - 47296331
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggt 77  Q
    ||||||||||||| |||||||||||| | |||||| ||| ||| |||||  |||||||| | ||||||||    
T  47296400 caatagtgattacaaacatctttaataccaatatcgattatcttaattctcgtgattttgacaaaaaggt 47296331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 10433525 - 10433601
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtga-ttttaataaaaaggttttata 83  Q
    ||||||||||||  ||||  |||||| |||||||| | ||||| ||||||||||| |||||| |||||||| |||||    
T  10433525 caatagtgattagaaacaaatttaatacaaatatctactttcttaattcatgtgatttttaacaaaaaggtcttata 10433601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 18237295 - 18237343
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattc 56  Q
    ||||||||||||| |||| ||||||| |||||||||| ||||| |||||    
T  18237295 caatagtgattacaaacaactttaatacaaatatccactttcttaattc 18237343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 47843 - 47902
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttta 67  Q
    ||||||||||||| |||| ||||||| |||||||||| ||||| |||||  |||||||||    
T  47843 caatagtgattacaaacaactttaatacaaatatccactttcttaattcccgtgatttta 47902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 9036763 - 9036688
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaaaggttttata 83  Q
    ||||||||||||| |||| ||||||| ||||||| || ||||| |||||  |||||||||| |||| ||| |||||    
T  9036763 caatagtgattacaaacaactttaatacaaatatacactttcttaattcccgtgattttaacaaaagggtcttata 9036688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 21295354 - 21295413
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttta 67  Q
    ||||||||||||| |||| ||||||| |||||||||| ||||| |||||  |||||||||    
T  21295354 caatagtgattacaaacaactttaatacaaatatccactttcttaattcccgtgatttta 21295413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 41002988 - 41002929
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgatttta 67  Q
    ||||||||||||| |||| ||||||| |||||||||| ||||| ||||| ||| ||||||    
T  41002988 caatagtgattacaaacaactttaatacaaatatccactttcttaattcctgtaatttta 41002929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 5524831 - 5524783
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattc 56  Q
    ||||||||||||| |||| ||||||||||||||| || ||||| |||||    
T  5524831 caatagtgattacaaacaactttaatgcaaatattcactttcttaattc 5524783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 49110861 - 49110813
Alignment:
Q  7 tcaatagtgattactaacatctttaatgcaaatatccattttctaaatt 55  Q
    |||||||||||||| |||| ||||||| |||||||| ||||||| ||||    
T  49110861 tcaatagtgattacaaacaactttaatacaaatatcaattttcttaatt 49110813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 118049 - 118113
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatccattttctaaattcatgtgattttaataaaa 73  Q
    ||||||||||||| |||| ||||||| ||||||||| |||||| |||||  |||||||||| ||||    
T  118049 caatagtgattacaaacaactttaatacaaatatccgttttcttaattc-cgtgattttaacaaaa 118113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 14182 - 14146
Alignment:
Q  8 caatagtgattactaacatctttaatgcaaatatcca 44  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  14182 caatagtgattacaaacatctttaatacaaatatcca 14146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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