View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: P12_low_14 (Length: 250)
Name: P12_low_14
Description: P12
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] P12_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 36576547 - 36576455
Alignment:
| Q |
1 |
ttcttttggagaagttttatatatgtatcgggccagtccaataattttaataaataaatgagagcaaaagcaaaattttaatatatgtagcctc |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36576547 |
ttcttttggagaagttttatatatgtatcgggtcagtccaataatttttaaaaataaatgagagcaaaagcaaaa-tttaatatatgtagcctc |
36576455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 36576380 - 36576306
Alignment:
| Q |
166 |
cgttggtatgtatgtggcttttaacgtgtctgagtatacatacaaatattttaatttcttaacaatggtttcatg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
36576380 |
cgttggtatgtatgtggcttttaacgtgtctgagtatacataaaaatattttaatttctcaacaatggtttcatg |
36576306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University