View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: P12_low_17 (Length: 232)

Name: P12_low_17
Description: P12
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] P12_low_17
P12_low_17
[»] chr3 (2 HSPs)
chr3 (91-174)||(19865308-19865391)
chr3 (14-83)||(19865193-19865262)
[»] chr5 (2 HSPs)
chr5 (91-174)||(40574279-40574362)
chr5 (14-87)||(40574162-40574237)
[»] chr7 (1 HSPs)
chr7 (91-174)||(43836417-43836500)
[»] chr1 (2 HSPs)
chr1 (91-159)||(18222003-18222071)
chr1 (91-174)||(18143578-18143661)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 19865308 - 19865391
Alignment:
Q  91 gattatcttgctcttgagattatttctcattttgtaatgcatggaacagatgtggctgagattgtaaaacttctgatcacattt 174  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19865308 gattatcttgctcctgagattatttctcattttgtaatgcatggaacagatgtggctgagattgtaaaacttctgatcacattt 19865391  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 19865193 - 19865262
Alignment:
Q  14 caaaggtaaattattattattgagttatgaaaattgccaatttcttggcgaaaatgtatttcttaccagt 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  19865193 caaaggtaaattattattattgagttatgaaaattgccaatttcttggcgaaattgtacttcttaccagt 19865262  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 40574279 - 40574362
Alignment:
Q  91 gattatcttgctcttgagattatttctcattttgtaatgcatggaacagatgtggctgagattgtaaaacttctgatcacattt 174  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40574279 gattatcttgctcctgagattatttctcattttgtaaggcatggaacagatgtggctgagattgtaaaacttctgatcacattt 40574362  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 40574162 - 40574237
Alignment:
Q  14 caaaggtaaattattatta--ttgagttatgaaaattgccaatttcttggcgaaaatgtatttcttaccagtgaaa 87  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||  ||| | ||||||||||||||||    
T  40574162 caaaggtaaattattatttgtttgagttatgaaaattgccaatttcttggcgttaatctttttcttaccagtgaaa 40574237  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 43836500 - 43836417
Alignment:
Q  91 gattatcttgctcttgagattatttctcattttgtaatgcatggaacagatgtggctgagattgtaaaacttctgatcacattt 174  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||  |||||||||||||||||||| |||||||||||||    
T  43836500 gattatcttgctcctgagattatttctcattttgtaatgcatggagcacgtgtggctgagattgtaaaacatctgatcacattt 43836417  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 18222003 - 18222071
Alignment:
Q  91 gattatcttgctcttgagattatttctcattttgtaatgcatggaacagatgtggctgagattgtaaaa 159  Q
    |||||||||||||  ||||||||||| |||||||||||||||||||| | |||||||||||||||||||    
T  18222003 gattatcttgctccggagattatttcgcattttgtaatgcatggaaccggtgtggctgagattgtaaaa 18222071  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 18143661 - 18143578
Alignment:
Q  91 gattatcttgctcttgagattatttctcattttgtaatgcatggaacagatgtggctgagattgtaaaacttctgatcacattt 174  Q
    |||||||||||||  |||||||||||||||||||||||||||||||| | ||||||||  |||||||||   ||||||||||||    
T  18143661 gattatcttgctccggagattatttctcattttgtaatgcatggaactggtgtggctgcaattgtaaaaaacctgatcacattt 18143578  T

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