View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: P12_low_18 (Length: 225)

Name: P12_low_18
Description: P12
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] P12_low_18
P12_low_18
[»] chr4 (10 HSPs)
chr4 (18-225)||(23453226-23453434)
chr4 (166-225)||(23868948-23869007)
chr4 (160-225)||(24307439-24307504)
chr4 (163-225)||(23886043-23886105)
chr4 (162-225)||(26434240-26434303)
chr4 (162-225)||(26832951-26833014)
chr4 (167-225)||(23408544-23408602)
chr4 (164-225)||(23402290-23402351)
chr4 (162-225)||(23415708-23415771)
chr4 (160-225)||(26436020-26436085)
[»] chr7 (1 HSPs)
chr7 (162-225)||(47317498-47317561)
[»] chr1 (1 HSPs)
chr1 (160-221)||(45576423-45576484)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 23453226 - 23453434
Alignment:
Q  18 atatatcattaatttcatcagtatgatacaaaaaagaaccagcccatcctattagttcattacaactttnnnnnnngcaaataacaaactacaaattaaa 117  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  23453226 atatatcattaatttcatcaatatgatacaaaaaagaaccagcccatcctattagttcattacaactttaaaaaaagcaaataacaaactacaaattaaa 23453325  T
Q  118 a-tatctaacgattcttgagcacaacaaaggccaccgattttctctcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagca 216  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| || || |||||||||||||||    
T  23453326 aatatctaacgattcttgagcacaacaaaggccaccgattttctctcagatctaagaactagtaaacttggtcacagccttggtgccttcagaaacagca 23453425  T
Q  217 tgcttggcc 225  Q
    |||||||||    
T  23453426 tgcttggcc 23453434  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 23869007 - 23868948
Alignment:
Q  166 atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggcc 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23869007 atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgtttggcc 23868948  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 24307504 - 24307439
Alignment:
Q  160 tctcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggcc 225  Q
    |||||||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||||    
T  24307504 tctcaaatctaagaactagtgaacttggtcacagctttggtaccctcagaaacagcatgcttggcc 24307439  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 23886105 - 23886043
Alignment:
Q  163 caaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggcc 225  Q
    ||||||||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||||||||    
T  23886105 caaatctaagaactagtaaacttggtcacagctttggttccctcagagacagcatgcttggcc 23886043  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 26434303 - 26434240
Alignment:
Q  162 tcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggcc 225  Q
    |||||||||||||||||| |||||||| ||||| || || || |||||||||||||||||||||    
T  26434303 tcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggcc 26434240  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 26833014 - 26832951
Alignment:
Q  162 tcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggcc 225  Q
    |||||||||||||||||| |||||||| ||||| || || || |||||||||||||||||||||    
T  26833014 tcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggcc 26832951  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 23408544 - 23408602
Alignment:
Q  167 tctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggcc 225  Q
    ||||||| ||||| |||||||||||||| || || ||||||||||||||||||||||||    
T  23408544 tctaagagctagtaaacttagtcacagccttggtgccttcagaaacagcatgcttggcc 23408602  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 23402351 - 23402290
Alignment:
Q  164 aaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggcc 225  Q
    |||||||||||||||| ||||| ||||||||||| ||||| || || |||||||||||||||    
T  23402351 aaatctaagaactagtaaacttggtcacagctttggttccctctgagacagcatgcttggcc 23402290  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 225
Target Start/End: Original strand, 23415708 - 23415771
Alignment:
Q  162 tcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggcc 225  Q
    |||| ||||||| ||||| |||||||||||||| || || || |||||||||||||||||||||    
T  23415708 tcaagtctaagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggcc 23415771  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 26436085 - 26436020
Alignment:
Q  160 tctcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggcc 225  Q
    ||||||||||||||||| || |||||||| ||||| || || || ||||||||| |||||||||||    
T  26436085 tctcaaatctaagaactggtaaacttagtgacagccttggtaccctcagaaacatcatgcttggcc 26436020  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 47317561 - 47317498
Alignment:
Q  162 tcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggcc 225  Q
    |||||| ||||||||||| ||||| ||||||||||| || || ||||||||| |||| ||||||    
T  47317561 tcaaatttaagaactagtaaacttggtcacagctttggtaccctcagaaacaacatgtttggcc 47317498  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 45576484 - 45576423
Alignment:
Q  160 tctcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgctt 221  Q
    |||||||||||||| || ||||| || ||||||||||| || || ||||||||| |||||||    
T  45576484 tctcaaatctaagagcttgtgaatttggtcacagctttggtaccctcagaaacaacatgctt 45576423  T

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