View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: P12_low_3 (Length: 671)
Name: P12_low_3
Description: P12
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] P12_low_3 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 180 - 671
Target Start/End: Original strand, 34133152 - 34133643
Alignment:
| Q |
180 |
ctatcaacacaacccaacatgagactttcaacaatcaatgaataatatattagtatgaatcaactacctgaattgtggaggatattgaggtgattgatta |
279 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34133152 |
ctatcaacacaacccaacatgagactttcaacgatcaatgaataatatattagtatgaatcaactacctgaattgtggaggatattgaggtgattgatta |
34133251 |
T |
|
| Q |
280 |
gtccattgaataacaccatcatcatgttcatcagaactacgaggaactaaagtaggatcttgagaaagaaaatcaaacacttctttccagtctctaacat |
379 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34133252 |
gtccattgaataacaccatcatcatgttcatcagaactccgaggaactaatgtaggatcttgagaaagaaaatcaaacacttctttccagtctctaacat |
34133351 |
T |
|
| Q |
380 |
ttttggtatgctctgtatcataataaccagtaggattgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagaagc |
479 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34133352 |
ttttggtatgctctgtatcataataaccagtaggattgacctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagaagc |
34133451 |
T |
|
| Q |
480 |
ttcctcaagtctctgccttagactcaaagggactccgtggtttgtgacttgaaagaaaccccactccttgcttgcacttccaatctccttcaccaagttt |
579 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34133452 |
ttcctcaagtctctgccttagactcaaagggactccatggtttgtgacttgaaagaaaccccactccttgcttgcacttccaatctccttcaccaagttt |
34133551 |
T |
|
| Q |
580 |
tcaatatcagatggatttggaactgcatggtgaagaattggagagagatcaatttcgggaattcctttggcttcgatgatggagagttttgg |
671 |
Q |
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| T |
34133552 |
tcaatatcagatggatttggaactgcatggtgaagaattggagagaggtcaatttcgggaattcctttggcttcgatgatggagagttttgg |
34133643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 241 - 671
Target Start/End: Original strand, 34137124 - 34137554
Alignment:
| Q |
241 |
aactacctgaattgtggaggatattgaggtgattgattagtccattgaataacaccatcatcatgttcatcagaactacgaggaactaaagtaggatctt |
340 |
Q |
| |
|
||||||||||| |||| ||| |||| || ||| |||||| ||||||||||| |||||| | |||||||||| | ||||||| ||||| ||||| | |
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| T |
34137124 |
aactacctgaagtgtgaagggaattgtggggatggattagaccattgaataaattgatcatcgttttcatcagaattcagaggaaccaaagtgggatcgt |
34137223 |
T |
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| Q |
341 |
gagaaagaaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataataaccagtaggattgatctcatctctagcaaccttctt |
440 |
Q |
| |
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| |||||||||| ||||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||||||| | |
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| T |
34137224 |
tggcgagaaaatcaagcacttctttccagtccctaacatttttggtgtgttctgtatcataataaccagttggattgatttcatctctagcaaccttcct |
34137323 |
T |
|
| Q |
441 |
cttctcctccaaactctgagcaaagaacaatctagaagcttcctcaagtctctgccttagactcaaagggactccgtggtttgtgacttgaaagaaaccc |
540 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||| |||||| |||||||||| |||||||||||||| ||||||||| |
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| T |
34137324 |
cttctcctccaaactctgagcaaagaacaatttagcagcttcatcaagtctctgcctaagactcgaagggactccatggtttgtgacttggaagaaaccc |
34137423 |
T |
|
| Q |
541 |
cactccttgcttgcacttccaatctccttcaccaagttttcaatatcagatggatttggaactgcatggtgaagaattggagagagatcaatttcgggaa |
640 |
Q |
| |
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||||| |||| |||||||||||| |||||||| |||||||||||||||||||||||||||||| ||| ||| | ||||||||||| |||||| |||||| |
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| T |
34137424 |
cactctttgcatgcacttccaatttccttcactaagttttcaatatcagatggatttggaacttcattgtggaatattggagagaggtcaattacgggaa |
34137523 |
T |
|
| Q |
641 |
ttcctttggcttcgatgatggagagttttgg |
671 |
Q |
| |
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||||||||||||| ||||| ||||||||||| |
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| T |
34137524 |
ttcctttggcttcaatgattgagagttttgg |
34137554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 348 - 671
Target Start/End: Original strand, 34140894 - 34141217
Alignment:
| Q |
348 |
aaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataataaccagtaggattgatctcatctctagcaaccttcttcttctcc |
447 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||| | || || |||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
34140894 |
aaaatcaaacacttctttcatgtctctaacattcttggtgagttcagtgtcataataaccagttggaatgatctcatctctagcaaccttcttcttctcc |
34140993 |
T |
|
| Q |
448 |
tccaaactctgagcaaagaacaatctagaagcttcctcaagtctctgccttagactcaaagggactccgtggtttgtgacttgaaagaaaccccactcct |
547 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||||||||| ||||||||||||| |||||| |||||| | | |
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| T |
34140994 |
tccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagactcaaagggactccatggtttgtgactttaaagaatccccacgctt |
34141093 |
T |
|
| Q |
548 |
tgcttgcacttccaatctccttcaccaagttttcaatatcagatggatttggaactgcatggtgaagaattggagagagatcaatttcgggaattccttt |
647 |
Q |
| |
|
||| |||||||||||||||||| || ||| |||||||| ||||||||||||||||| ||| ||| | |||||||||||||||||||| ||||| ||||| |
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| T |
34141094 |
tgcatgcacttccaatctccttgactaagctttcaatagcagatggatttggaacttcattgtggaatattggagagagatcaatttctggaataccttt |
34141193 |
T |
|
| Q |
648 |
ggcttcgatgatggagagttttgg |
671 |
Q |
| |
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|||||| |||| |||||||||||| |
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| T |
34141194 |
ggcttctatgagggagagttttgg |
34141217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 243 - 671
Target Start/End: Original strand, 34126942 - 34127370
Alignment:
| Q |
243 |
ctacctgaattgtggaggatattgaggtgattgattagtccattgaataacaccatcatcatgttcatcagaactacgaggaactaaagtaggatcttga |
342 |
Q |
| |
|
||||||||||| ||||||||| | ||| || |||||| |||||||||||| |||||||| ||||||| || | ||||||| ||||| |||||| |
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| T |
34126942 |
ctacctgaattttggaggatacttaggggacggattagaccattgaataacttgatcatcattttcatcacaattcagaggaaccaaagtgggatctctg |
34127041 |
T |
|
| Q |
343 |
gaaagaaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataataaccagtaggattgatctcatctctagcaaccttcttct |
442 |
Q |
| |
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| | |||||||||||||||| |||||| ||| ||||| ||||| |||||| ||||| |||||||| | || ||||||||||||| ||||||||| | | |
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| T |
34127042 |
gcgaaaaaatcaaacacttctatccagtttcttacattcttggtgtgctctttatcaaaataaccaattggtgtgatctcatctctggcaaccttcattt |
34127141 |
T |
|
| Q |
443 |
tctcctccaaactctgagcaaagaacaatctagaagcttcctcaagtctctgccttagactcaaagggactccgtggtttgtgacttgaaagaaacccca |
542 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||| |||||||| ||||| | |||||||||||| | |||||||| ||||||||||| ||||| |
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|
| T |
34127142 |
tctcctccaaactttgagcaaagaacaatctagcagcttcatcaagtctttgcctaatactcaaagggacctcatggtttgtaacttgaaagaagcccca |
34127241 |
T |
|
| Q |
543 |
ctccttgcttgcacttccaatctccttcaccaagttttcaatatcagatggatttggaactgcatggtgaagaattggagagagatcaatttcgggaatt |
642 |
Q |
| |
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||||||| |||||||||||||| |||||||||| | |||||| ||||| ||| | ||||| ||||||| | ||||| ||||| ||||||||||||||| |
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| T |
34127242 |
ttccttgcatgcacttccaatcttcttcaccaagctatcaatagcagattgatcttgaacttcatggtggaatattggtgagaggtcaatttcgggaatt |
34127341 |
T |
|
| Q |
643 |
cctttggcttcgatgatggagagttttgg |
671 |
Q |
| |
|
|||| |||||| |||||||| |||||||| |
|
|
| T |
34127342 |
ccttcggcttcaatgatggatagttttgg |
34127370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 34131865 - 34132035
Alignment:
| Q |
17 |
caaattcaacttagacggtgtcggatactcaccacttatgaacaaattttgggtctataacgtccaatctgttaacttctatctaattcatacataactg |
116 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34131865 |
caaattcaacttagacggtgttgaatactcaccacttatgaacaaattttgggtctatcacgtccaatctgttaacttctatctaattcatacataactg |
34131964 |
T |
|
| Q |
117 |
tcatatttatagagatcaattgcaacaaattcccaagtcctaactactggacataattatttactatcaac |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34131965 |
tcatatttatagagatcaattgcaacaaattcctaagtcctaactactggacataattatttactatcaac |
34132035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 248 - 409
Target Start/End: Original strand, 34143277 - 34143438
Alignment:
| Q |
248 |
tgaattgtggaggatattgaggtgattgattagtccattgaataacaccatcatcatgttcatcagaactacgaggaactaaagtaggatcttgagaaag |
347 |
Q |
| |
|
|||| |||||||| |||||||| ||| |||||||||| | | | || |||||| |||||||||||| | ||||||| |||||||| || | ||| || |
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| T |
34143277 |
tgaagtgtggagggtattgaggggatggattagtccagtaagtgacttgatcatcgtgttcatcagaattcagaggaaccaaagtagggtcattagagag |
34143376 |
T |
|
| Q |
348 |
aaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataataaccag |
409 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||||| |
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| T |
34143377 |
aaaatcaaacacttctttccagtctcttacattcttggtgtgctctgtatcatgataaccag |
34143438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 348 - 404
Target Start/End: Original strand, 12324008 - 12324064
Alignment:
| Q |
348 |
aaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataata |
404 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| || |||||||| || |||||||| |
|
|
| T |
12324008 |
aaaatcaaacacttccttccaatctctaacattcttagtatgctcagtttcataata |
12324064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 348 - 404
Target Start/End: Original strand, 12375161 - 12375217
Alignment:
| Q |
348 |
aaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataata |
404 |
Q |
| |
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||||||||||||||| ||||| ||||||||||| || |||||||| || |||||||| |
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| T |
12375161 |
aaaatcaaacacttccttccaatctctaacattcttagtatgctcagtttcataata |
12375217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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