View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: P12_low_4 (Length: 617)

Name: P12_low_4
Description: P12
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] P12_low_4
P12_low_4
[»] chr7 (6 HSPs)
chr7 (468-617)||(760786-760936)
chr7 (529-617)||(704534-704624)
chr7 (488-542)||(1408955-1409009)
chr7 (48-207)||(27984293-27984454)
chr7 (145-182)||(8140960-8140997)
chr7 (48-80)||(28617355-28617387)
[»] chr6 (6 HSPs)
chr6 (12-191)||(1115195-1115372)
chr6 (48-210)||(33721689-33721846)
chr6 (27-113)||(30519129-30519216)
chr6 (145-191)||(9036108-9036154)
chr6 (50-109)||(28301096-28301155)
chr6 (50-109)||(28510918-28510977)
[»] chr4 (8 HSPs)
chr4 (3-113)||(37781765-37781876)
chr4 (10-113)||(873607-873711)
chr4 (50-189)||(4956015-4956150)
chr4 (145-213)||(37781666-37781734)
chr4 (55-113)||(3991925-3991984)
chr4 (55-113)||(5269328-5269385)
chr4 (53-115)||(16630815-16630876)
chr4 (152-186)||(48142207-48142241)
[»] chr3 (4 HSPs)
chr3 (533-597)||(5934951-5935016)
chr3 (17-113)||(25516883-25516981)
chr3 (12-143)||(21156299-21156434)
chr3 (55-143)||(29100040-29100128)
[»] scaffold0076 (1 HSPs)
scaffold0076 (48-210)||(16119-16269)
[»] chr2 (6 HSPs)
chr2 (12-113)||(28770866-28770969)
chr2 (20-113)||(3277905-3277999)
chr2 (55-110)||(5699691-5699746)
chr2 (48-113)||(2869824-2869889)
chr2 (151-202)||(16388705-16388755)
chr2 (55-113)||(23078608-23078666)
[»] scaffold0002 (1 HSPs)
scaffold0002 (12-111)||(14589-14688)
[»] chr5 (2 HSPs)
chr5 (12-143)||(5611012-5611147)
chr5 (48-115)||(34842504-34842571)
[»] chr1 (5 HSPs)
chr1 (18-206)||(35109634-35109815)
chr1 (55-113)||(29651713-29651771)
chr1 (67-116)||(32737145-32737195)
chr1 (148-202)||(48591034-48591088)
chr1 (148-202)||(48600729-48600783)
[»] chr8 (4 HSPs)
chr8 (62-110)||(32916318-32916366)
chr8 (62-109)||(11771855-11771902)
chr8 (56-116)||(5990699-5990759)
chr8 (146-202)||(8863863-8863919)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 7e-63; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 468 - 617
Target Start/End: Complemental strand, 760936 - 760786
Alignment:
Q  468 gagattcattggctaaggtaaaaacagtggcagccttgtcattcataccagaatttataagctcagtcattatcataatagggatctgattatcaaggtg 567  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  760936 gagatccattggctaaggtaaaaacagtggcagccttgtcattcataccagaatttataagctcagtcattatcataatagggatttgattatcaaggtg 760837  T
Q  568 gaaatcactat-aggatgcttcacaacaatatcacgatacgcactaactgc 617  Q
     | |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  760836 aacatcactatgaggatgcttcataacaatatcacgatacgcactaactgc 760786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 529 - 617
Target Start/End: Original strand, 704534 - 704624
Alignment:
Q  529 ctcagtcattatcataatagggatctgattatcaaggtggaaatcactat-aggatgcttcacaacaatatcac-gatacgcactaactgc 617  Q
    |||||||||||||||||||||||| |||||||||||||| | |||||||| ||||||||||| |||||||||||  |||||||||||||||    
T  704534 ctcagtcattatcataatagggatttgattatcaaggtgaacatcactatgaggatgcttcataacaatatcacaaatacgcactaactgc 704624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 488 - 542
Target Start/End: Original strand, 1408955 - 1409009
Alignment:
Q  488 aaaacagtggcagccttgtcattcataccagaatttataagctcagtcattatca 542  Q
    ||||||||| ||||||  ||| |||||||||||||||||||||||||||||||||    
T  1408955 aaaacagtgacagcctcatcagtcataccagaatttataagctcagtcattatca 1409009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 207
Target Start/End: Complemental strand, 27984454 - 27984293
Alignment:
Q  48 tttgtttctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgtt---gttgcttcaaactatgtttctcattgattactacg 144  Q
    ||||||||||| |||||| ||||| | |||||||| |||||||| ||||| | |||||||||   ||||||| | ||||  ||  |||||||||| |||     
T  27984454 tttgtttctttaaatatgtttgtgttattgcttcacacttagatataagtttgtttgttgttatcgttgcttaagactactttattcattgatta-tac- 27984357  T
Q  145 tacttcttttgctccacatatctaagttttattggtgtga-ttatttgtttgagttcactacaa 207  Q
    || ||| ||||||||| | || |||||||||||| ||||| |||||||||||| ||||| ||||    
T  27984356 taattcctttgctccaaacatataagttttattgatgtgatttatttgtttgaattcacaacaa 27984293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 8140960 - 8140997
Alignment:
Q  145 tacttcttttgctccacatatctaagttttattggtgt 182  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  8140960 tacttcttttgctccacacatcttagttttattggtgt 8140997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 28617355 - 28617387
Alignment:
Q  48 tttgtttctttgaatatgcttgtggtgttgctt 80  Q
    |||||| ||||||||||||||||||||||||||    
T  28617355 tttgttgctttgaatatgcttgtggtgttgctt 28617387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 191
Target Start/End: Original strand, 1115195 - 1115372
Alignment:
Q  12 aatactggtgtgttgtttcctt-ctcttctttcatat-tttgtttctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgtt 109  Q
    |||| ||||||||||||||||| ||| ||| |||||| ||||||  ||| |||| |  ||||||||| ||||| ||  ||||||| || |||||||||||    
T  1115195 aatattggtgtgttgtttcctttctcatctgtcatatctttgttggtttaaataagactgtggtgttacttcacacagagatctatgtctatttgttgtt 1115294  T
Q  110 gttgcttcaaactatgtttctcattgattactacgtacttcttttgctccacatatctaagttttattggtgtgattatttg 191  Q
    ||||||| || |||  || |||||||||||||||    ||||||| ||||| |||||||||||||||||||| |||||||||    
T  1115295 gttgcttgaagctactttgctcattgattactac----ttcttttactccatatatctaagttttattggtgcgattatttg 1115372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 48 - 210
Target Start/End: Original strand, 33721689 - 33721846
Alignment:
Q  48 tttgtttctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgttgttgcttcaaactatgtttctcattgattactacgtac 147  Q
    |||||| ||||||||||| |||||||| || |||| ||||||||||| | || |||||||||||||||| ||||||  || ||||| ||||||    |||    
T  33721689 tttgttgctttgaatatgtttgtggtgatgtttcacacttagatctagggatgtttgttgttgttgcttgaaactactttactcatcgattac----tac 33721784  T
Q  148 ttcttttgctccacatatctaagttttattggtgtgattatttgtttgagttcactacaacaa 210  Q
    ||| |||| |||||| ||||  ||||||||| ||||||||||||||  | ||||| |||||||    
T  33721785 ttcctttgttccacacatct-ggttttattgatgtgattatttgttcaaattcacaacaacaa 33721846  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 30519129 - 30519216
Alignment:
Q  27 tttccttctcttctttcatat-tttgtttctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgttgttg 113  Q
    |||| ||||||| |||| ||| |||||| |||| |||||| || ||||||||||||| ||||| |||||| ||| |||||||||||||    
T  30519129 tttctttctcttatttcttatctttgttgctttaaatatgtttatggtgttgcttcacacttaaatctaaatatgtttgttgttgttg 30519216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 9036154 - 9036108
Alignment:
Q  145 tacttcttttgctccacatatctaagttttattggtgtgattatttg 191  Q
    |||||| ||||||||||||||||||| ||||||||||| ||||||||    
T  9036154 tacttcatttgctccacatatctaagatttattggtgtaattatttg 9036108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 28301096 - 28301155
Alignment:
Q  50 tgtttctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgtt 109  Q
    |||||||||||||||| |||| ||||||||||| |||| |||||| |||| ||| |||||    
T  28301096 tgtttctttgaatatgtttgtagtgttgcttcacacttcgatctaggtatgtttattgtt 28301155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 28510977 - 28510918
Alignment:
Q  50 tgtttctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgtt 109  Q
    |||||||||||||||| |||| ||||||||||| |||| |||||| |||| ||| |||||    
T  28510977 tgtttctttgaatatgtttgtagtgttgcttcacacttcgatctaggtatgtttattgtt 28510918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 37781876 - 37781765
Alignment:
Q  3 tgggtagataatactggtgtgttgtttccttctcttctttcatat-tttgtttctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatat 101  Q
    |||||| | |||| |||| |||||||| ||||| || |||| ||| |||||| |||||||||||||||||||||||||||| ||||||||||| || |||    
T  37781876 tgggtaaacaatattggtttgttgttttcttctattatttcttatctttgttgctttgaatatgcttgtggtgttgcttcacacttagatctaggtctat 37781777  T
Q  102 ttgttgttgttg 113  Q
    |||||| |||||    
T  37781776 ttgttgatgttg 37781765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 873607 - 873711
Alignment:
Q  10 ataatactggtgtgttgtttccttctcttctttcatatttt-gtttctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgt 108  Q
    |||||| ||||||||||||||||| |||| |||| ||| || |||  |||||||||| ||||||||||| |||| |||||||| |||||   ||||||||    
T  873607 ataatattggtgtgttgtttccttatcttgtttcttatcttcgttgttttgaatatgtttgtggtgttgtttcacacttagatttaagtcagtttgttgt 873706  T
Q  109 tgttg 113  Q
    |||||    
T  873707 tgttg 873711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 189
Target Start/End: Complemental strand, 4956150 - 4956015
Alignment:
Q  50 tgtttctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgttgttgcttcaaactatgtttctcattgattactacgtactt 149  Q
    |||| |||||| |||| |||||||||||||||| ||||| |||||  |   |||||||||||||||| |  ||   || ||||||||||| |||    ||    
T  4956150 tgttgctttgattatgtttgtggtgttgcttcacacttaaatctagatccgtttgttgttgttgcttgaggctgcattgctcattgattattac----tt 4956055  T
Q  150 cttttgctccacatatctaagttttattggtgtgattatt 189  Q
    | |||||||||||| |||||||| ||||||| ||||||||    
T  4956054 cctttgctccacatgtctaagttatattggtatgattatt 4956015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 37781734 - 37781666
Alignment:
Q  145 tacttcttttgctccacatatctaagttttattggtgtgattatttgtttgagttcactacaacaagaa 213  Q
    ||||||||||||||||||  |||||||||||||  | | ||||||||||||| ||||| ||| ||||||    
T  37781734 tacttcttttgctccacacttctaagttttattattataattatttgtttgaattcacaacaccaagaa 37781666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 3991984 - 3991925
Alignment:
Q  55 ctttgaatatgcttgtggtgttgcttcaaacttagatctaag-tatatttgttgttgttg 113  Q
    |||| ||||||||||| ||||||||||| ||||||||||||| | | |||||||||||||    
T  3991984 ctttaaatatgcttgtagtgttgcttcacacttagatctaagctttgtttgttgttgttg 3991925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 5269328 - 5269385
Alignment:
Q  55 ctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgttgttg 113  Q
    |||||| ||||||||||||||||||  | ||||||||||| |||||||| |||||||||    
T  5269328 ctttgattatgcttgtggtgttgctctacacttagatctaggtatattt-ttgttgttg 5269385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 16630815 - 16630876
Alignment:
Q  53 ttctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgttgttgct 115  Q
    |||||||| ||||||||||||||||||| | ||||||||||| || | ||| |||||||||||    
T  16630815 ttctttgattatgcttgtggtgttgctttacacttagatctaggtttgttt-ttgttgttgct 16630876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 152 - 186
Target Start/End: Complemental strand, 48142241 - 48142207
Alignment:
Q  152 tttgctccacatatctaagttttattggtgtgatt 186  Q
    ||||||||||| |||||||||||||||||||||||    
T  48142241 tttgctccacacatctaagttttattggtgtgatt 48142207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 533 - 597
Target Start/End: Complemental strand, 5935016 - 5934951
Alignment:
Q  533 gtcattatcataatagggatctgattatcaaggtggaaatcactat-aggatgcttcacaacaata 597  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  5935016 gtcattatcataaaagggatgtgattatcaaggtggaaatcactatcaggatgcttcacaacaata 5934951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 25516981 - 25516883
Alignment:
Q  17 tggtgtgttgttt-ccttctcttctttcatatt-ttgtttctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgttgttg 113  Q
    ||||||||||||| || ||||||||||| |||  ||||| |||| |||||| ||||||||||| |||| |||| ||||||||| ||||| |||||||||    
T  25516981 tggtgtgttgttttccctctcttctttcttatccttgttactttaaatatgtttgtggtgttgtttcacacttcgatctaagtctattttttgttgttg 25516883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 21156434 - 21156299
Alignment:
Q  12 aatactggtgtgttgtttccttctcttctttcatat-tttgtttctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttg---ttg 107  Q
    |||| ||||||||||||| |||| |||||||| ||| |||||| |||||||||| ||| |||||||| ||||  |||||||||| || | ||||   ||     
T  21156434 aatattggtgtgttgttttcttcccttctttcttatctttgttgctttgaatattcttatggtgttgtttcactcttagatctaggtttgtttgttattt 21156335  T
Q  108 ttgttgcttcaaactatgtttctcattgattactac 143  Q
    ||||||||| | ||||  || |||||||||||||||    
T  21156334 ttgttgcttaagactactttactcattgattactac 21156299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 29100128 - 29100040
Alignment:
Q  55 ctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgttgttgcttcaaactatgtttctcattgattactac 143  Q
    ||||||||||| |||||||||| ||||| | |||||||||  |   |||||||||||||||| | |||||  | |||||||||||||||    
T  29100128 ctttgaatatgtttgtggtgtttcttcacagttagatctatctcagtttgttgttgttgcttgagactattctactcattgattactac 29100040  T

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Target: scaffold0076 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 48 - 210
Target Start/End: Original strand, 16119 - 16269
Alignment:
Q  48 tttgtttctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgttgttgcttcaaactatgtttctcattgattactacgtac 147  Q
    |||||| ||||||||||| ||||||||||| |||| ||||||||||| ||| ||   |||||||||||| ||||||     ||||||||||||    |||    
T  16119 tttgttgctttgaatatgtttgtggtgttgtttcacacttagatctaggtaaat---ttgttgttgcttgaaacta-----ctcattgattac----tac 16206  T
Q  148 ttcttttgctccacatatctaagttttattggtgtgattatttgtttgagttcactacaacaa 210  Q
    ||| ||||||| ||| ||||||||||||||||||| |||||| |||  | ||||| |||||||    
T  16207 ttcctttgctcgacacatctaagttttattggtgtaattattagttcaaattcacaacaacaa 16269  T

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Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 28770866 - 28770969
Alignment:
Q  12 aatactggtgtgttgtttcctt-ctcttctttcatattttgttt-ctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgtt 109  Q
    |||| |||||| |||||||||| |||||||||  ||| || ||| |||||| ||||||||||||||||||||| ||||||||||| || ||||||||||     
T  28770866 aatattggtgtcttgtttcctttctcttctttattatattttttgctttgattatgcttgtggtgttgcttcacacttagatctaggtctatttgttgta 28770965  T
Q  110 gttg 113  Q
    ||||    
T  28770966 gttg 28770969  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 3277999 - 3277905
Alignment:
Q  20 tgtgttgtttccttctcttctttcatattttgttt-ctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgttgttg 113  Q
    |||||| ||||| |||||| |||| ||| || ||| ||||||||||| |||| ||||||||||| |||||||||||  | |||||||||||||||    
T  3277999 tgtgttttttccctctcttatttcttatcttttttgctttgaatatgtttgtagtgttgcttcacacttagatctagatctatttgttgttgttg 3277905  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 5699746 - 5699691
Alignment:
Q  55 ctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgttg 110  Q
    ||||||||| |||||||||||||||| | ||||||||||| || ||||||||||||    
T  5699746 ctttgaataagcttgtggtgttgctttacacttagatctaggtctatttgttgttg 5699691  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 2869824 - 2869889
Alignment:
Q  48 tttgtttctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgttgttg 113  Q
    |||||| |||||||||||||| ||||||||||  | |||||||| || || |||||||||||||||    
T  2869824 tttgttgctttgaatatgcttatggtgttgctctacacttagatttaggtctatttgttgttgttg 2869889  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 16388705 - 16388755
Alignment:
Q  151 ttttgctccacatatctaagttttattggtgtgattatttgtttgagttcac 202  Q
    |||||||||||| |||||||||| |||| ||||||||||||||||| |||||    
T  16388705 ttttgctccacacatctaagttt-attgatgtgattatttgtttgaattcac 16388755  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 23078608 - 23078666
Alignment:
Q  55 ctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgttgttg 113  Q
    |||||| ||||||||||||||||||  | ||||||||||| |||| ||| |||||||||    
T  23078608 ctttgattatgcttgtggtgttgctctacacttagatctaggtatgttttttgttgttg 23078666  T

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Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 14688 - 14589
Alignment:
Q  12 aatactggtgtgttgtttccttctcttctttcatat-tttgtttctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgttg 110  Q
    |||| ||||||||| |||| |||||||||||  ||| |||||||||||||| ||||||| |||||| ||||| |||||||| || |||| ||||||||||    
T  14688 aatattggtgtgttttttctttctcttctttt-tatctttgtttctttgaacatgcttgaggtgtttcttcatacttagatataggtatgtttgttgttg 14590  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 5611147 - 5611012
Alignment:
Q  12 aatactggtgtgttgtttccttctcttctttcatat-tttgtttctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttg---ttg 107  Q
    |||| ||||||||||||| |||| |||||||| ||| |||||| |||||||||| ||| |||||||| ||||  |||||||||| || | ||||   ||     
T  5611147 aatattggtgtgttgttttcttcccttctttcttatctttgttgctttgaatattcttatggtgttgtttcactcttagatctaggtttgtttgttattt 5611048  T
Q  108 ttgttgcttcaaactatgtttctcattgattactac 143  Q
    ||||||||| | ||||  || |||||||||||||||    
T  5611047 ttgttgcttaagactactttactcattgattactac 5611012  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 34842571 - 34842504
Alignment:
Q  48 tttgtttctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgttgttgct 115  Q
    |||||| ||| | |||||||||||||||||||||| ||||||||||| || | ||| |||||||||||    
T  34842571 tttgttgcttcggatatgcttgtggtgttgcttcacacttagatctaggtttgtttattgttgttgct 34842504  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 35109634 - 35109815
Alignment:
Q  18 ggtgtgttgtttccttctcttctttcatat-tttgtttctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgttgttgctt 116  Q
    ||||||||||||| |||||||||||| | | ||||||||||| | |||| ||||||||||| | |  ||||||||||| || | |   ||||||||||||    
T  35109634 ggtgtgttgtttctttctcttctttcttctctttgtttctttaattatgtttgtggtgttgttccgcacttagatctaggtctgt---ttgttgttgctt 35109730  T
Q  117 caaactatgtttctcattgattactacgtacttcttttgctccacatatctaagttttattggtgtgatta-tttgtttgagttcactaca 206  Q
     | ||||   ||  ||||||||||    |||||| ||| ||| ||| |||||||||||||||||||||||| |||||| || |||||||||    
T  35109731 gagacta--ctttgcattgattac----tacttcctttcctctacacatctaagttttattggtgtgattattttgttcgaattcactaca 35109815  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 29651771 - 29651713
Alignment:
Q  55 ctttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgttgttg 113  Q
    |||||| ||||||||||||||||||  | |||||||||||||| | ||| |||||||||    
T  29651771 ctttgattatgcttgtggtgttgctctacacttagatctaagtctgttttttgttgttg 29651713  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 32737145 - 32737195
Alignment:
Q  67 ttgtggtgttgcttcaaacttagatctaagtatattt-gttgttgttgctt 116  Q
    |||||||||||||||| |||||||||||||| | ||| |||||||||||||    
T  32737145 ttgtggtgttgcttcacacttagatctaagtctgtttcgttgttgttgctt 32737195  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 48591034 - 48591088
Alignment:
Q  148 ttcttttgctccacatatctaagttttattggtgtgattatttgtttgagttcac 202  Q
    ||||||| || |||| ||||||||||||||| ||||||||||| ||||| |||||    
T  48591034 ttcttttacttcacacatctaagttttattgatgtgattatttatttgaattcac 48591088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 48600729 - 48600783
Alignment:
Q  148 ttcttttgctccacatatctaagttttattggtgtgattatttgtttgagttcac 202  Q
    ||||||| || |||| ||||||||||||||| ||||||||||| ||||| |||||    
T  48600729 ttcttttacttcacacatctaagttttattgatgtgattatttatttgaattcac 48600783  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 32916366 - 32916318
Alignment:
Q  62 tatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgttg 110  Q
    |||||||||||||||| |||| ||||| |||||||| ||||||||||||    
T  32916366 tatgcttgtggtgttggttcatacttatatctaagtttatttgttgttg 32916318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 11771902 - 11771855
Alignment:
Q  62 tatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgtt 109  Q
    ||||||| ||||||||||||| ||||||||||| |||| |||||||||    
T  11771902 tatgcttttggtgttgcttcatacttagatctaggtatgtttgttgtt 11771855  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 5990699 - 5990759
Alignment:
Q  56 tttgaatatgcttgtggtgttgcttcaaacttagatctaagtatatttgttgttgttgctt 116  Q
    |||||||||||||||||| ||| |  | |||||||| || || ||||||||||||||||||    
T  5990699 tttgaatatgcttgtggttttgttctacacttagatttaggtctatttgttgttgttgctt 5990759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 8863863 - 8863919
Alignment:
Q  146 acttcttttgctccacatatctaagttttattggtgtgattatttgtttgagttcac 202  Q
    ||||| |||| | |||| || ||||||||||||||||||||||||||| || |||||    
T  8863863 acttcctttgtttcacacatttaagttttattggtgtgattatttgttcgaattcac 8863919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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