View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: P12_low_5 (Length: 567)
Name: P12_low_5
Description: P12
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] P12_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 14 - 549
Target Start/End: Complemental strand, 33105041 - 33104506
Alignment:
| Q |
14 |
tactccttggcaaacacaaatggaacaatcccttgaggaagtgcagcctattttcagcaaattacattttcataagctaacaatctaaaacttttacaat |
113 |
Q |
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| T |
33105041 |
tactccttggcaaacacaaatggaacaatcccttgaggaagtgcagcctattttcagcaaattacattttcataagctaacaatctaaaacttttacaat |
33104942 |
T |
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| Q |
114 |
tcatgtttattgaacttagatttgctgtagtcactaactgcgcgtattcatgcggtcagtggatccacggcggtctgatatctcaaaattctgcttattt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
33104941 |
tcatgtttattgaacttagatttgctgtagtcactaactgcgcgtattcatgcggtcagtggatccgcgacggtctgatatctcaaaattctgcttattt |
33104842 |
T |
|
| Q |
214 |
tttgaaccgttgtggatctactgactatgtaaatacgtgcattaagtggcttttgagaatgtggattcatgtcttgtgcactcatattgtacacttcata |
313 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33104841 |
tttgaaccgtcgtggatctactgactatgtaaatacgtgcattaagtggcttttgagaatgtggattcatgtcttgtacactcatattgtacacttcata |
33104742 |
T |
|
| Q |
314 |
gacttgtttgcctttgttnnnnnnngcatgctagagtggaaatcaaggttaattatatacctgaacaatagctacacgtaaaaggttaccacgcagtcca |
413 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33104741 |
gacttgtttgcctttgttaaaacaagcatgctagagtggaaatcaaggttaattatatacctgaacaatagctacacgtaaaaggttaccacgcagtcca |
33104642 |
T |
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| Q |
414 |
acagcaatggaagctgcagccatgactgcaggacctgtaagaaatcgaacagccattgcaaatgaagcaactgagtttccacatgcaatcatcttgggtt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33104641 |
acagcaatggaagctgcagccatgactgcaggacctgtaagaaatcgaacagccattgcaaatgaagcaactgagtttccacatgcaatcatcttgggtt |
33104542 |
T |
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| Q |
514 |
gtagagccataaacaaacctgtgcatatgcaaacaa |
549 |
Q |
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| T |
33104541 |
gtagagccataaacaaacctgtgcatatgcaaacaa |
33104506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 52718374 - 52718332
Alignment:
| Q |
20 |
ttggcaaacacaaatggaacaatcccttgaggaagtgcagcct |
62 |
Q |
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| T |
52718374 |
ttggcaaacacaaagggaacaataccttggggaagtgcagcct |
52718332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 372 - 533
Target Start/End: Original strand, 10835806 - 10835967
Alignment:
| Q |
372 |
acctgaacaatagctacacgtaaaaggttaccacgcagtccaacagcaatggaagctgcagccatgactgcaggacctgtaagaaatcgaacagccattg |
471 |
Q |
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|||||||||||||||||| ||| ||| | ||||| || ||||| || || |||||||| ||||| ||||| ||||| ||||| |||| | |||||| | |
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| T |
10835806 |
acctgaacaatagctacatgtaggagggtcccacggaggccaacggcgatagaagctgctgccataactgctggaccagtaaggaatcttatagccatgg |
10835905 |
T |
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| Q |
472 |
caaatgaagcaactgagtttccacatgcaatcatcttgggttgtagagccataaacaaacct |
533 |
Q |
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| T |
10835906 |
caaatgaagcaacagaattcccacatgcaatgatcttgggttgaagagccataaacagacct |
10835967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 10834997 - 10835052
Alignment:
| Q |
14 |
tactccttggcaaacacaaatggaacaatcccttgaggaagtgcagcctattttca |
69 |
Q |
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||||| || |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10834997 |
tactcttttgcaaacacaaatggaacaatcccttgtggaagtgcagcctattttca |
10835052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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