View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: P12_low_6 (Length: 505)
Name: P12_low_6
Description: P12
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] P12_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 8 - 487
Target Start/End: Original strand, 43279451 - 43279930
Alignment:
| Q |
8 |
agataatactcctaggagatgaggttggtaaatatatatcaaccccatgcagcatggaactgaaatgaaaaaagagctttggtgacaagaacttgtaaat |
107 |
Q |
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| T |
43279451 |
agataatactcctaggagatgaggttggtaaatatatatcaaccccatgcagcatggaactgaaatgaaaaaagagctttggtgacaagaacttgtaaat |
43279550 |
T |
|
| Q |
108 |
atatcaacaactttgaactgatagctaagagaatcaatactttgttcattttttgttgtacccgagtttaaatccaaaattcttcctttgtctgtgtgaa |
207 |
Q |
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| T |
43279551 |
atatcaacaactttgaactgatagctaagagaagcaatactttgttcattttttgttgtacccgagtttaaatccaaaattcttcctttgtctgtgtgaa |
43279650 |
T |
|
| Q |
208 |
tatttcggttgatattttccacccagtcaacttaacaaaatatcaatagttatgaaatagacgtgatacattttggtgtatagttaaattaggacaatgg |
307 |
Q |
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| T |
43279651 |
tatttcggttgatattttccacccagtcaacttaacaaaatatcaatagttatgaaatagacgtgatacattttggtgtatagttaaattaggacaatgg |
43279750 |
T |
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| Q |
308 |
gatggggtcctcgtattctcctatactttgaacaatctagtgattgtttcaacttccaactaaacagtttgtactatagttgctattgtttttctcttcc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43279751 |
gatggggtcctcgtattctcctatactttgaacaatctagtgattgtttcaacttccaactaaacagtttgtactatagttgctattgtttttctcttcc |
43279850 |
T |
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| Q |
408 |
atgtgtgcttgtaactgtgtgtgttggaatcttctataaataaaacaattatactagctagtagctaggaattaagtaat |
487 |
Q |
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| T |
43279851 |
atgtgtgcttgtaactgtgtgtgttggaatcttctataaataaaacaattatactagctagtagctaggaattaagtaat |
43279930 |
T |
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