View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: P12_low_7 (Length: 478)
Name: P12_low_7
Description: P12
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] P12_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 26 - 458
Target Start/End: Complemental strand, 4274629 - 4274196
Alignment:
| Q |
26 |
ttttgatattgtggcaatccattactatccttaatgttacgattgtcatttcaaagatctttaaatttaccgacgaatgttggttcaagtggcaagaaag |
125 |
Q |
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| T |
4274629 |
ttttgatattgtggcaatccattactatccttaatgttacgattgtcatttcaaagatctttaaatttaccgacgaatgttggttcaagtggcaagaaag |
4274530 |
T |
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| Q |
126 |
tttggtgctcctaagtacgatatgaggttgagtcttgtaaatggaaaaatttatgttattccctttattcttatctactgactcagttcatgtcatacat |
225 |
Q |
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| T |
4274529 |
tttggtgctcctaagtacgatatgaggttgaatcttgtaaatggaaaaatttatgttattccctttattcttatctactgactcagttcatgtcatacat |
4274430 |
T |
|
| Q |
226 |
atagtgttaacgacaaaatattctaacaagtccaataa-nnnnnnnncctaaatgttaatccgaatttgtttttcttaaactaaacaatctttaaatttt |
324 |
Q |
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| T |
4274429 |
atagtgtaaacgacaaaatattctaataagtccaataatttttttttcctaaatgttaatccgaatttgtttttcttaaactaaacaatctttaaatttt |
4274330 |
T |
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| Q |
325 |
tcctggcgtgttccaatcctttaattccaaacgtgagacacatgctgcattttatcctattcattaactgtttctcagaatatatgaataaaatgtagct |
424 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4274329 |
tccttgcgtgttccaatcctttaattccaaacatgagacacatgctgcattttatcctattcattaactgtttctcagaatatatgaataaaatgtagct |
4274230 |
T |
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| Q |
425 |
tgtccaaattttttagcaacaaagagtgctgcag |
458 |
Q |
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| T |
4274229 |
tgtccaaattttttagcaacaaagagtgctgcag |
4274196 |
T |
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