View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: R75-LTR4-TNT-insertion-1 (Length: 205)
Name: R75-LTR4-TNT-insertion-1
Description: R75-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R75-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 39300029 - 39300110
Alignment:
| Q |
103 |
ttttttatataatccttgtcaaatctggtcaatgaaacctttattgaagttgctagggttttaggacataacagtttgttaa |
184 |
Q |
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| T |
39300029 |
ttttttatataatccttgtcaaatctggtcaacgaaaacttaattgaagttgctagggtttcaggacataacagtttgttaa |
39300110 |
T |
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Target: chr5 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 26879966 - 26880044
Alignment:
| Q |
103 |
ttttttatataatccttgtcaaatctggtcaatgaaacctttattgaagttgctagggttttaggacataacagtttgt |
181 |
Q |
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| T |
26879966 |
tttttcatacaatccttgtcaaatctggtcaatgaaactttaattgaagttcctagggttttaggacataacagtttgt |
26880044 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 24907817 - 24907773
Alignment:
| Q |
60 |
gcatgttgcacgaaaaatcatgtcgtacattgtatcattatcctt |
104 |
Q |
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| T |
24907817 |
gcatgttgcacgaaaaatcatgtcgtgctttgtatcattatcctt |
24907773 |
T |
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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 21382985 - 21382942
Alignment:
| Q |
66 |
tgcacgaaaaatcatgtcgtacattgtatcattatcctttttta |
109 |
Q |
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| T |
21382985 |
tgcacgaaaaatcatgtcgtgctttgtatcattatccttcttta |
21382942 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 37501677 - 37501633
Alignment:
| Q |
60 |
gcatgttgcacgaaaaatcatgtcgtacattgtatcattatcctt |
104 |
Q |
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| T |
37501677 |
gcatgttgcatgaaaaatcatgtcgtgctttgtatcattatcctt |
37501633 |
T |
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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 3443658 - 3443616
Alignment:
| Q |
60 |
gcatgttgcacgaaaaatcatgtcgtacattgtatcattatcc |
102 |
Q |
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| T |
3443658 |
gcatgttgcatgaaaaatcatgtcgtgctttgtatcattatcc |
3443616 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 27100829 - 27100878
Alignment:
| Q |
7 |
accattgaaagatataagtttctgatttctcatcaactaaaagataaaaa |
56 |
Q |
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| T |
27100829 |
accactgaaagatataagtttcttatttctaatcaaataaaagaaaaaaa |
27100878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 27177474 - 27177425
Alignment:
| Q |
7 |
accattgaaagatataagtttctgatttctcatcaactaaaagataaaaa |
56 |
Q |
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| T |
27177474 |
accactgaaagatataagtttcttatttctaatcaaataaaagaaaaaaa |
27177425 |
T |
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