View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: R75-LTR4-TNT-insertion-3 (Length: 195)
Name: R75-LTR4-TNT-insertion-3
Description: R75-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] R75-LTR4-TNT-insertion-3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 25001332 - 25001146
Alignment:
| Q |
1 |
cccaacaataacaactagctagaggttagttcaggagtgttctacttaaagttcatcagacgagccaaagattgatacctagctagatcaaccaacaaca |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
25001332 |
cccaacaacaacaactagctagaggttagttcaggagtgttctacttaaaattcatcggacgagccaaagattgttacttagctagatcaaccaacaaca |
25001233 |
T |
|
| Q |
101 |
actctgacaaaatggaacactctgaaatataaattaatcaaaagattcttcccgcatagtcgtattcatgatgctaagctagcaatt |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25001232 |
actctgacaaaatggaacactctgaaatataaattaatcaaaagattattcccgcatagtcgtattcatgatgctaagctagcaatt |
25001146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University