View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: R75-LTR4-TNT-insertion-5 (Length: 63)

Name: R75-LTR4-TNT-insertion-5
Description: R75-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] R75-LTR4-TNT-insertion-5
R75-LTR4-TNT-insertion-5
[»] chr4 (29 HSPs)
chr4 (7-56)||(652700-652749)
chr4 (12-56)||(29148612-29148656)
chr4 (12-56)||(32655115-32655159)
chr4 (12-56)||(52180370-52180414)
chr4 (12-56)||(42052863-42052907)
chr4 (15-56)||(1757631-1757672)
chr4 (12-56)||(3094573-3094617)
chr4 (12-56)||(3386822-3386866)
chr4 (12-56)||(21076296-21076340)
chr4 (12-56)||(23147875-23147919)
chr4 (12-56)||(42755811-42755855)
chr4 (12-56)||(52596015-52596059)
chr4 (12-56)||(52801808-52801852)
chr4 (12-56)||(53141093-53141137)
chr4 (12-56)||(2720831-2720875)
chr4 (12-56)||(12186243-12186287)
chr4 (12-56)||(12188237-12188281)
chr4 (12-56)||(14577258-14577302)
chr4 (12-56)||(33983607-33983651)
chr4 (12-56)||(34459227-34459271)
chr4 (17-56)||(38001071-38001110)
chr4 (15-56)||(19444353-19444394)
chr4 (12-56)||(8066427-8066471)
chr4 (12-56)||(25938827-25938871)
chr4 (16-56)||(26337207-26337247)
chr4 (16-56)||(39804782-39804822)
chr4 (12-56)||(45098043-45098087)
chr4 (12-56)||(46030671-46030715)
chr4 (21-56)||(41003803-41003838)
[»] chr7 (17 HSPs)
chr7 (12-56)||(31455359-31455403)
chr7 (12-56)||(46181680-46181724)
chr7 (12-56)||(16568034-16568078)
chr7 (12-56)||(16597584-16597628)
chr7 (12-56)||(39415032-39415076)
chr7 (12-56)||(12920601-12920645)
chr7 (12-56)||(17171810-17171854)
chr7 (12-56)||(43224785-43224829)
chr7 (13-56)||(27399057-27399100)
chr7 (12-56)||(3551144-3551188)
chr7 (16-56)||(12499157-12499197)
chr7 (12-56)||(19805493-19805537)
chr7 (16-56)||(26299904-26299944)
chr7 (12-56)||(40787901-40787945)
chr7 (12-56)||(44301192-44301236)
chr7 (12-56)||(46783535-46783579)
chr7 (21-56)||(5923359-5923394)
[»] chr5 (15 HSPs)
chr5 (12-56)||(14645777-14645821)
chr5 (12-56)||(41617037-41617081)
chr5 (12-56)||(31149305-31149349)
chr5 (12-56)||(34718374-34718418)
chr5 (12-56)||(41692058-41692102)
chr5 (12-56)||(7978492-7978536)
chr5 (12-56)||(14088729-14088773)
chr5 (12-56)||(15718800-15718844)
chr5 (12-56)||(18595821-18595865)
chr5 (12-56)||(29456251-29456295)
chr5 (12-56)||(1061421-1061465)
chr5 (16-56)||(4898362-4898402)
chr5 (12-56)||(10937896-10937940)
chr5 (12-56)||(19254038-19254082)
chr5 (14-49)||(14088126-14088161)
[»] chr3 (15 HSPs)
chr3 (12-56)||(44792245-44792289)
chr3 (12-56)||(24987014-24987058)
chr3 (12-56)||(19619142-19619186)
chr3 (12-56)||(25467946-25467990)
chr3 (12-56)||(50508498-50508542)
chr3 (12-53)||(30247654-30247695)
chr3 (12-56)||(5040662-5040706)
chr3 (12-56)||(11672186-11672230)
chr3 (12-56)||(13735251-13735295)
chr3 (12-56)||(41924426-41924470)
chr3 (12-56)||(45078802-45078846)
chr3 (12-56)||(49360408-49360452)
chr3 (12-56)||(50480676-50480720)
chr3 (16-56)||(32995745-32995785)
chr3 (12-56)||(42096339-42096383)
[»] chr2 (16 HSPs)
chr2 (12-56)||(4481514-4481558)
chr2 (12-56)||(25425214-25425258)
chr2 (12-56)||(33867148-33867192)
chr2 (12-56)||(4290107-4290151)
chr2 (12-56)||(23232193-23232237)
chr2 (15-56)||(17961065-17961106)
chr2 (12-56)||(13142182-13142226)
chr2 (12-56)||(30241880-30241924)
chr2 (19-56)||(15149835-15149872)
chr2 (19-56)||(38620856-38620893)
chr2 (19-56)||(44070056-44070093)
chr2 (12-56)||(667585-667629)
chr2 (12-56)||(3329621-3329665)
chr2 (12-56)||(10391237-10391281)
chr2 (16-56)||(15162454-15162494)
chr2 (12-56)||(31440247-31440291)
[»] chr1 (20 HSPs)
chr1 (12-56)||(9222703-9222747)
chr1 (12-56)||(13313195-13313239)
chr1 (12-56)||(2433671-2433715)
chr1 (12-56)||(4892884-4892928)
chr1 (12-56)||(19506843-19506887)
chr1 (12-56)||(29185559-29185603)
chr1 (12-56)||(33362487-33362531)
chr1 (12-56)||(33794017-33794061)
chr1 (12-56)||(38491881-38491925)
chr1 (14-56)||(28192045-28192087)
chr1 (19-56)||(35978112-35978149)
chr1 (12-56)||(25814936-25814980)
chr1 (12-56)||(27783960-27784004)
chr1 (12-56)||(28221427-28221471)
chr1 (12-56)||(42068730-42068774)
chr1 (12-56)||(44327536-44327579)
chr1 (17-56)||(7815365-7815404)
chr1 (13-56)||(43634141-43634183)
chr1 (12-56)||(236975-237019)
chr1 (12-56)||(20415439-20415483)
[»] chr6 (11 HSPs)
chr6 (15-56)||(33329059-33329100)
chr6 (15-56)||(33332071-33332112)
chr6 (12-56)||(13532539-13532583)
chr6 (12-56)||(1221304-1221348)
chr6 (12-56)||(6337653-6337697)
chr6 (12-56)||(24446711-24446755)
chr6 (12-56)||(31071249-31071293)
chr6 (12-56)||(1329167-1329211)
chr6 (12-56)||(28770250-28770294)
chr6 (12-56)||(29640367-29640411)
chr6 (12-56)||(31510537-31510581)
[»] chr8 (12 HSPs)
chr8 (12-56)||(3616473-3616517)
chr8 (12-56)||(24789974-24790018)
chr8 (12-56)||(25500510-25500554)
chr8 (12-56)||(1667615-1667659)
chr8 (12-56)||(2620566-2620610)
chr8 (12-56)||(24891054-24891098)
chr8 (12-56)||(19643120-19643164)
chr8 (12-56)||(20216680-20216724)
chr8 (12-56)||(20236278-20236322)
chr8 (12-56)||(26560840-26560884)
chr8 (17-56)||(1376654-1376693)
chr8 (12-55)||(7058030-7058073)
[»] scaffold0230 (1 HSPs)
scaffold0230 (12-56)||(27108-27152)
[»] scaffold0011 (1 HSPs)
scaffold0011 (16-56)||(250682-250722)
[»] scaffold0005 (1 HSPs)
scaffold0005 (12-56)||(240073-240117)
[»] scaffold0164 (2 HSPs)
scaffold0164 (12-56)||(6715-6759)
scaffold0164 (12-56)||(14596-14640)


Alignment Details
Target: chr4 (Bit Score: 46; Significance: 5e-18; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-18
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 652700 - 652749
Alignment:
Q  7 acaccttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  652700 acacattgtgggtattttttgcgggtatccattgggtctgggtccaattg 652749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 29148656 - 29148612
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29148656 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 29148612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 32655159 - 32655115
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32655159 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 32655115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 52180414 - 52180370
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  52180414 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 52180370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 42052907 - 42052863
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  42052907 ttgtgggtattttttgcgggtatccattgggtctgggttcaattg 42052863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 1757672 - 1757631
Alignment:
Q  15 tgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  1757672 tgggtattttttgcaggtatccattgggtctgggtccaattg 1757631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 3094617 - 3094573
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||    
T  3094617 ttgtgggtattttttgcgggtacccattgggtctgggttcaattg 3094573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 3386866 - 3386822
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  3386866 ttgtgggtattttttgcgggtatccattgggtttgtgtccaattg 3386822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 21076296 - 21076340
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||    
T  21076296 ttgtggatattttttgcgggtacccattgggtctgggtccaattg 21076340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 23147875 - 23147919
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||    
T  23147875 ttgtggatattttttgcgggtatccattgggtttgggtccaattg 23147919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 42755811 - 42755855
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||| |||||||| |||||    
T  42755811 ttgtgggtattttttgcgggtatccattggatctgggtctaattg 42755855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 52596015 - 52596059
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||    
T  52596015 ttgtgagtattttttgcgggtatccattggatctgggtccaattg 52596059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 52801852 - 52801808
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||||||||||||| | |||||||||||||||    
T  52801852 ttgtgggtattttttgcgggtatccatcgagtctgggtccaattg 52801808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 53141093 - 53141137
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||||||||||||| | |||||||||||||||    
T  53141093 ttgtgggtattttttgcgggtatccatcgagtctgggtccaattg 53141137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 2720875 - 2720831
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||||||| ||||||||||||| ||||||||||||||    
T  2720875 ttgtggatattttttgtgggtatccattggatctgggtccaattg 2720831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 12186243 - 12186287
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||||||| ||||||||||||| ||||||||||||||    
T  12186243 ttgtggatattttttgtgggtatccattggatctgggtccaattg 12186287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 12188237 - 12188281
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||||||| ||||||||||||| ||||||||||||||    
T  12188237 ttgtggatattttttgtgggtatccattggatctgggtccaattg 12188281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 14577258 - 14577302
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||||||| ||||||||||||| ||||||||||||||    
T  14577258 ttgtggatattttttgtgggtatccattggatctgggtccaattg 14577302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 33983607 - 33983651
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||| |||||||| ||||||||||||||||| |||||||||||||    
T  33983607 ttgtaggtattttatgcgggtatccattgggcctgggtccaattg 33983651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 34459271 - 34459227
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||    
T  34459271 ttgtgggtattttatgcgggtatccattggacctgggtccaattg 34459227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 38001071 - 38001110
Alignment:
Q  17 ggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  38001071 ggtattttttgcgagtacccattgggtctgggtccaattg 38001110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 19444394 - 19444353
Alignment:
Q  15 tgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||| |||| ||||| ||||||||||||    
T  19444394 tgggtattttttgcgggtgtccactgggtttgggtccaattg 19444353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 8066427 - 8066471
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||| ||||| | ||||| ||||||||    
T  8066427 ttgtgggtattttttgcgggtacccattagatctggatccaattg 8066471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 25938827 - 25938871
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||  ||||||||||||  ||||||||||||||    
T  25938827 ttgtgggtattttttatgggtatccattgaatctgggtccaattg 25938871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 26337247 - 26337207
Alignment:
Q  16 gggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||  |||| |||||||||||||||||    
T  26337247 gggtattttttgcgggtgcccatagggtctgggtccaattg 26337207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 39804782 - 39804822
Alignment:
Q  16 gggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||  |||| |||||||||||||||||    
T  39804782 gggtattttttgcgggtgcccatagggtctgggtccaattg 39804822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 45098043 - 45098087
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||| ||| |||||  ||||||||||||||||    
T  45098043 ttgtgggtattttttgcaggtgtccatcaggtctgggtccaattg 45098087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 46030671 - 46030715
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||| ||||| ||||||||||||||  ||||||||||||||    
T  46030671 ttgtgggtttttttagcgggtatccattgaatctgggtccaattg 46030715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 41003803 - 41003838
Alignment:
Q  21 ttttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||| |||||||||| ||||||||||||||||    
T  41003803 ttttttgcaggtatccattaggtctgggtccaattg 41003838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-17; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 31455359 - 31455403
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  31455359 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 31455403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 46181680 - 46181724
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  46181680 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 46181724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 16568034 - 16568078
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  16568034 ttgtgggtattttttgcaggtatccattgggtctgggtccaattg 16568078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 16597628 - 16597584
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  16597628 ttgtgggtattttttgcaggtatccattgggtctgggtccaattg 16597584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 39415032 - 39415076
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  39415032 ttgtgggtattttttgcgggtatccattgggtctgggtctaattg 39415076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 12920645 - 12920601
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||| |||||||| |||||    
T  12920645 ttgtgggtattttttgcgggtatccattggatctgggtctaattg 12920601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 17171854 - 17171810
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||||||||||||| | |||||||||||||||    
T  17171854 ttgtgggtattttttgcgggtatccatcgagtctgggtccaattg 17171810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 43224785 - 43224829
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||| ||| |||||||||||| ||||||||||||||    
T  43224785 ttgtgggtattttatgcaggtatccattggatctgggtccaattg 43224829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 27399057 - 27399100
Alignment:
Q  13 tgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||| |||||||||| | ||||||||||||    
T  27399057 tgtgggtattttttgcggatatccattggatatgggtccaattg 27399100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 3551188 - 3551144
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||| |||| |||| ||| |||||||||||||    
T  3551188 ttgtgggtattttttgcaggtacccatcgggcctgggtccaattg 3551144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 12499197 - 12499157
Alignment:
Q  16 gggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||| ||| ||||| |||||||||||||||||    
T  12499197 gggtattttttgcaggtgtccatagggtctgggtccaattg 12499157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 19805493 - 19805537
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||||||||||||| ||||||| | ||||||||||||    
T  19805493 ttgtggatattttttgcgggtacccattggatttgggtccaattg 19805537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 26299904 - 26299944
Alignment:
Q  16 gggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||| ||||||||| || ||||||||||||||    
T  26299904 gggtattttttgcaggtatccataggatctgggtccaattg 26299944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 40787945 - 40787901
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||  |||| ||||||| |||||||||    
T  40787945 ttgtgggtattttttgcgggtgcccatcgggtctgagtccaattg 40787901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 44301192 - 44301236
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||| |||  |||| |||||||||||||||||    
T  44301192 ttgtgggtattttttgcaggtgcccatcgggtctgggtccaattg 44301236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 46783535 - 46783579
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||| ||||||||||||| || ||||||| ||||||||||||||    
T  46783535 ttgtgagtattttttgcggatacccattggatctgggtccaattg 46783579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 5923394 - 5923359
Alignment:
Q  21 ttttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||| ||||||||| |||||||||||||||||    
T  5923394 ttttttgcaggtatccatcgggtctgggtccaattg 5923359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-17; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 14645777 - 14645821
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14645777 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 14645821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 41617037 - 41617081
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  41617037 ttgtgggtattttttgcgggtatccattgggtctggatccaattg 41617081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 31149349 - 31149305
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  31149349 ttgtgggtattttatacgggtatccattgggtctgggtccaattg 31149305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 34718418 - 34718374
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||||||||||||| | |||||||||||||||    
T  34718418 ttgtgggtattttttgcgggtatccatcgagtctgggtccaattg 34718374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 41692102 - 41692058
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||||||||||||| | |||||||||||||||    
T  41692102 ttgtgggtattttttgcgggtatccatcgagtctgggtccaattg 41692058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 7978492 - 7978536
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||| |||||||||| |||||| |||||||||||||    
T  7978492 ttgtgggtattttatgcgggtatcaattgggcctgggtccaattg 7978536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 14088729 - 14088773
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||| |||||||||||||| |||||||||||||||| |||||    
T  14088729 ttgtgggcattttttgcgggtacccattgggtctgggtcaaattg 14088773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 15718844 - 15718800
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||    
T  15718844 ttgtgggtattttttgcgggtatccattgaatctaggtccaattg 15718800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 18595821 - 18595865
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||||    
T  18595821 ttgtgagtattttatgcgggtatccattgggcctgggtccaattg 18595865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 29456251 - 29456295
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| |||||| ||||||||||||||||| |||||||||||||    
T  29456251 ttgtggatattttatgcgggtatccattgggcctgggtccaattg 29456295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 1061421 - 1061465
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||| | ||||  ||||||||||||||    
T  1061421 ttgtgggtattttttgcgggtacctattgaatctgggtccaattg 1061465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 4898402 - 4898362
Alignment:
Q  16 gggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||| ||||||| |||||||||| |||||||||||||||||    
T  4898402 gggttttttttgtgggtatccatcgggtctgggtccaattg 4898362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 10937896 - 10937940
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||| |||| ||| |||||| ||||||    
T  10937896 ttgtgggtattttttgcgggtacccatcgggcctgggttcaattg 10937940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 19254082 - 19254038
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||| |||  |||| |||||||||||||||||    
T  19254082 ttgtgggtattttttgctggtgcccatcgggtctgggtccaattg 19254038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 14088126 - 14088161
Alignment:
Q  14 gtgggtattttttgcgggtatccattgggtctgggt 49  Q
    ||||||||||| |||||| |||||||||||||||||    
T  14088126 gtgggtattttatgcgggcatccattgggtctgggt 14088161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-17; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 44792289 - 44792245
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  44792289 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 44792245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 24987058 - 24987014
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  24987058 ttgtgggtattttttgcgggtatccattgggtttgggtccaattg 24987014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 19619142 - 19619186
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||    
T  19619142 ttgtgggtattttttgtgggtacccattgggtctgggtccaattg 19619186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 25467946 - 25467990
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||    
T  25467946 ttgtgggtattttatgcgggtatccattgggcctgggtccaattg 25467990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 50508542 - 50508498
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  50508542 ttgtgggtattttatacgggtatccattgggtctgggtccaattg 50508498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 30247695 - 30247654
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaa 53  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  30247695 ttgtgggtattttttgcgggtgtccatcgggtctgggtccaa 30247654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 5040706 - 5040662
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| |||||| ||||||||||||||||| |||||||||||||    
T  5040706 ttgtggatattttatgcgggtatccattgggcctgggtccaattg 5040662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 11672186 - 11672230
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||| || |||||||||||||| |||||||||||||    
T  11672186 ttgtgggtattttatgtgggtatccattgggcctgggtccaattg 11672230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 13735295 - 13735251
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||||||||||||| ||||||| ||||||||||||||    
T  13735295 ttgtggatattttttgcgggtacccattggatctgggtccaattg 13735251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 41924426 - 41924470
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||    
T  41924426 ttgtgggtattttttgcgggtatccattgaatctggatccaattg 41924470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 45078846 - 45078802
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||| |||| | |||||||||||||||    
T  45078846 ttgtgggtattttttgcgggtacccatcgagtctgggtccaattg 45078802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 49360408 - 49360452
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||||||||||||| ||||||| ||||||||||||||    
T  49360408 ttgtggatattttttgcgggtacccattggatctgggtccaattg 49360452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 50480720 - 50480676
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||||||| ||||||||||||| ||||||||||||||    
T  50480720 ttgtggatattttttgtgggtatccattggatctgggtccaattg 50480676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 32995745 - 32995785
Alignment:
Q  16 gggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||| |||| ||||| |||||||||||||||||    
T  32995745 gggtattttttgtgggtgtccatagggtctgggtccaattg 32995785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 42096383 - 42096339
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||  |||| ||||||||||| |||||    
T  42096383 ttgtgggtattttttgcgggtgcccatcgggtctgggtcaaattg 42096339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-17; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 4481514 - 4481558
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4481514 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 4481558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 25425214 - 25425258
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25425214 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 25425258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 33867192 - 33867148
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  33867192 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 33867148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 4290107 - 4290151
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||||||||||||| | |||||||||||||||    
T  4290107 ttgtgggtattttttgcgggtatccatcgagtctgggtccaattg 4290151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 23232193 - 23232237
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||    
T  23232193 ttgtggatatttgttgcgggtatccattgggtctgggtccaattg 23232237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 17961106 - 17961065
Alignment:
Q  15 tgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||| ||||||||| |||||||||||||||    
T  17961106 tgggtattttttgcggatatccattgagtctgggtccaattg 17961065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 13142226 - 13142182
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||| ||||||| |||| |||||||||||||||    
T  13142226 ttgtgggtattttttgtgggtatctattgagtctgggtccaattg 13142182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 30241880 - 30241924
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||||||||||||| |||||| |||||||||||||||    
T  30241880 ttgtggctattttttgcgggtacccattgagtctgggtccaattg 30241924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 15149872 - 15149835
Alignment:
Q  19 tattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  15149872 tattttatgcgggtatccattgggtctgagtccaattg 15149835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 38620856 - 38620893
Alignment:
Q  19 tattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  38620856 tattttttgcggatatccattggatctgggtccaattg 38620893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 44070093 - 44070056
Alignment:
Q  19 tattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  44070093 tattttttgcgggtacccattgtgtctgggtccaattg 44070056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 667629 - 667585
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||| |||| |||||||||||| ||| |||||||||    
T  667629 ttgtgggtattttatgcgagtatccattgggcctgagtccaattg 667585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 3329621 - 3329665
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||||||||||||| ||||| ||||||||| ||||||    
T  3329621 ttgtggatattttttgcgggtacccattaggtctgggttcaattg 3329665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 10391281 - 10391237
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||| || ||||| || ||||||||||||||    
T  10391281 ttgtgggtattttttgcgagtgtccataggatctgggtccaattg 10391237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 15162454 - 15162494
Alignment:
Q  16 gggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||| ||||| || ||||||||||||||    
T  15162454 gggtattttttgcgggtgtccataggatctgggtccaattg 15162494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 31440291 - 31440247
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||| ||||| |||| ||||| ||||||||||    
T  31440291 ttgtgggtattttttgcaggtattcatttggtctaggtccaattg 31440247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-17; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 9222703 - 9222747
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  9222703 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 9222747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 13313195 - 13313239
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13313195 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 13313239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 2433671 - 2433715
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  2433671 ttgtgggtattttttgcgggtatccattgggtctggatccaattg 2433715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 4892928 - 4892884
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||||||||||||| | |||||||||||||||    
T  4892928 ttgtgggtattttttgcgggtatccatcgagtctgggtccaattg 4892884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 19506843 - 19506887
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||    
T  19506843 ttgtgggtattttatgcgggtatccattgggcctgggtccaattg 19506887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 29185559 - 29185603
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||||||||||||| | |||||||||||||||    
T  29185559 ttgtgggtattttttgcgggtatccatcgagtctgggtccaattg 29185603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 33362531 - 33362487
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||||||||||||| | |||||||||||||||    
T  33362531 ttgtgggtattttttgcgggtatccatcgagtctgggtccaattg 33362487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 33794061 - 33794017
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  33794061 ttgtgggtatttttggcgggtacccattgggtctgggtccaattg 33794017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 38491881 - 38491925
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||    
T  38491881 ttgtgggtattttatgcgggtatccattgggtatgggtccaattg 38491925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 28192087 - 28192045
Alignment:
Q  14 gtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  28192087 gtgggtattttttgcgggtgtccatagggtctgggtccaattg 28192045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 35978149 - 35978112
Alignment:
Q  19 tattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  35978149 tattttttgcgggtacccattgggtctgggtccaattg 35978112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 25814980 - 25814936
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||||||||||||||||||||| |||||||| |||||    
T  25814980 ttgtggatattttttgcgggtatccattggatctgggtctaattg 25814936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 27783960 - 27784004
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||||||| ||||||||||||| ||||||||||||||    
T  27783960 ttgtggatattttttgtgggtatccattggatctgggtccaattg 27784004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 28221427 - 28221471
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| |||||| ||||||||||||||||| |||||||||||||    
T  28221427 ttgtggctattttatgcgggtatccattgggcctgggtccaattg 28221471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 42068774 - 42068730
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||| ||||||| | ||||||||||||    
T  42068774 ttgtgggtattttttgcgggtacccattggatttgggtccaattg 42068730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 44327579 - 44327536
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||    
T  44327579 ttgtgggtattttttgcgg-tatccattgggtctgggcccaattg 44327536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 7815365 - 7815404
Alignment:
Q  17 ggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  7815365 ggtattttttgcgagtgtccattgggtctgggtccaattg 7815404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 43634183 - 43634141
Alignment:
Q  13 tgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||| |||||||||| ||||||||||||||    
T  43634183 tgtgggtattttttgcgg-tatccattggatctgggtccaattg 43634141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 236975 - 237019
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||| |||| |||  ||||||||||||    
T  236975 ttgtgggtattttttgcgggtaaccatcgggcttgggtccaattg 237019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 20415439 - 20415483
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||  |||| || ||||||||||||||    
T  20415439 ttgtgggtattttttgcgggtgcccatcggatctgggtccaattg 20415483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 33329059 - 33329100
Alignment:
Q  15 tgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33329059 tgggtattttttgcgggtatccattgggtctgggtccaattg 33329100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 33332071 - 33332112
Alignment:
Q  15 tgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33332071 tgggtattttttgcgggtatccattgggtctgggtccaattg 33332112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 13532583 - 13532539
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  13532583 ttgtgggtattttttgcgggtatccattgggtctgggtctaattg 13532539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 1221348 - 1221304
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||||||||||||| | |||||||||||||||    
T  1221348 ttgtgggtattttttgcgggtatccatcgagtctgggtccaattg 1221304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 6337653 - 6337697
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||    
T  6337653 ttgtgggttttttttgcgggtatccattgggtctggatccaattg 6337697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 24446755 - 24446711
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||||||||||||| | |||||||||||||||    
T  24446755 ttgtgggtattttttgcgggtatccatcgagtctgggtccaattg 24446711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 31071249 - 31071293
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||    
T  31071249 ttgtgggtattttttgcgggtacccattgggtttgggtccaattg 31071293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 1329211 - 1329167
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||||||||||||||| || ||||| ||||||    
T  1329211 ttgtgggtattttttgcgggtatccattgagtatgggttcaattg 1329167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 28770250 - 28770294
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| |||||||||||||||| |||||||| ||||||||||||    
T  28770250 ttgtggatattttttgcgggtattcattgggtttgggtccaattg 28770294  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 29640411 - 29640367
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||||||||||||| ||||||||||||| ||||||||    
T  29640411 ttgtggatattttttgcgggtacccattgggtctggatccaattg 29640367  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 31510581 - 31510537
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||||||||||||| |||||| |||||||| ||||||    
T  31510581 ttgtggatattttttgcgggtacccattgcgtctgggtacaattg 31510537  T

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Target: chr8 (Bit Score: 41; Significance: 0.000000000000005; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 3616517 - 3616473
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  3616517 ttgtgggtattttttgcgggtacccattgggtctgggtccaattg 3616473  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 24789974 - 24790018
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| |||||||||||||||| |||||||||||||||||||||    
T  24789974 ttgtggatattttttgcgggtattcattgggtctgggtccaattg 24790018  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 25500510 - 25500554
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||    
T  25500510 ttgtgggtattttatgcgggtatccattgggcctgggtccaattg 25500554  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 1667615 - 1667659
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||| ||| ||||||||||||||||| |||||||||||||    
T  1667615 ttgtgggtaatttatgcgggtatccattgggcctgggtccaattg 1667659  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 2620610 - 2620566
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| |||||| ||||||||||||||||| |||||||||||||    
T  2620610 ttgtggatattttatgcgggtatccattgggcctgggtccaattg 2620566  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 24891098 - 24891054
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||||    
T  24891098 ttgtgggtattttatgcgggtatccgttgggcctgggtccaattg 24891054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 19643164 - 19643120
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| |||||| |||||||||||||||||  ||||||||||||    
T  19643164 ttgtggatattttatgcgggtatccattgggcatgggtccaattg 19643120  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 20216680 - 20216724
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||| |||  |||| |||||||||||||||||    
T  20216680 ttgtgggtattttttgcaggtgcccatcgggtctgggtccaattg 20216724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 20236278 - 20236322
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||| |||  |||| |||||||||||||||||    
T  20236278 ttgtgggtattttttgcaggtgcccatcgggtctgggtccaattg 20236322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 26560884 - 26560840
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||| ||||||||||||||||||||||   |||||||||||||||    
T  26560884 ttgtaggtattttttgcgggtatccatcaagtctgggtccaattg 26560840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 1376654 - 1376693
Alignment:
Q  17 ggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||| ||||||  ||||||||||||||    
T  1376654 ggtattttttgcgggtacccattgaatctgggtccaattg 1376693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 7058030 - 7058073
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaatt 55  Q
    |||||||||||||||||||||| |||| ||  ||||||||||||    
T  7058030 ttgtgggtattttttgcgggtacccatcggacctgggtccaatt 7058073  T

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Target: scaffold0230 (Bit Score: 37; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 27108 - 27152
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||||||||||||| | |||||||||||||||    
T  27108 ttgtgggtattttttgcgggtatccatcgagtctgggtccaattg 27152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 33; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 250682 - 250722
Alignment:
Q  16 gggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    ||||||||||||||||| ||||||||| |||||||||||||    
T  250682 gggtattttttgcgggtgtccattgggcctgggtccaattg 250722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 240117 - 240073
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||||||| ||||||||||||| ||||||||||||||    
T  240117 ttgtggatattttttgtgggtatccattggatctgggtccaattg 240073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 29; Significance: 0.00000007; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 6759 - 6715
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||||||||||||| |||||||  |||||||||||||    
T  6759 ttgtggatattttttgcgggtacccattggagctgggtccaattg 6715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #2
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 14640 - 14596
Alignment:
Q  12 ttgtgggtattttttgcgggtatccattgggtctgggtccaattg 56  Q
    |||||| ||||||||||||||| |||||||  |||||||||||||    
T  14640 ttgtggatattttttgcgggtacccattggagctgggtccaattg 14596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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