View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SD37_6 (Length: 339)
Name: SD37_6
Description: SD37
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SD37_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 6 - 339
Target Start/End: Complemental strand, 52034130 - 52033797
Alignment:
| Q |
6 |
agaagcagagatgagagcccaccatggcatttgtatctcttctttcatgaaaatacacaatgcaagtgcaagtaaaaatgaaaccacaagcgtaacatga |
105 |
Q |
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| T |
52034130 |
agaagcaaagatgagagcccaccatggcatttgtatctcttctttcttgaaaatacacaatgcaagtgcaagtaaaaatgaaaccacaagcgtaacatga |
52034031 |
T |
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| Q |
106 |
aaccaccaattaggtatgtctttatacttcttcatcaatcttgtgtgaatgtcttcctttccagttcgggaagattgaagttgatgatatatatctctgc |
205 |
Q |
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| T |
52034030 |
aaccaccaattaggtatgtctttatacttcttcatcaatcttgtgtgaatgtcttcctttccagttcgggaagattgaagttgatgatatatatctctgc |
52033931 |
T |
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| Q |
206 |
agttagttaatttaatcagcaatagtaatttaattccacaatttgagaactatatatgcaatgtaacttaaccataacttactttccattaaatatggca |
305 |
Q |
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| T |
52033930 |
agttagttaatttaatcagcaatagtaatttaattccacaatttgagaactatatatgcaatgtaacttaaccataacttactttccattaaatatggca |
52033831 |
T |
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| Q |
306 |
acgtgagtgagtgtagagacaatggcagcaaagc |
339 |
Q |
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| T |
52033830 |
acgtgagtgagtgtagagacaatggcagcaaagc |
52033797 |
T |
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