View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: SD37_8 (Length: 265)
Name: SD37_8
Description: SD37
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SD37_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 260
Target Start/End: Original strand, 28162424 - 28162677
Alignment:
| Q |
7 |
tattgcttccgaatcttatatccaaagttaaggagaatcgttgctcaatatttgtagatgcttaacactgaaattcttgttttctatttttaattttatc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28162424 |
tattgcttccgaatcttatatccaaagttatggagaatcgttgctcaatatttgtagatgcttaacactgaaattcttgttttctatttttaattttatt |
28162523 |
T |
|
| Q |
107 |
tgtagtggaatcagactcttgcaaaatataatatatgatgtaaaatatagtgaggttgatccattataagatatgatatatcatttagtgatttaaatct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28162524 |
cgtagtggaatcagactcttgcaaaatataatatatggtgtaaaatatagtgaggttgatccattataagatatgatatatcatttagtgatttaaatct |
28162623 |
T |
|
| Q |
207 |
gtgtaggaagatcttgatgaccaaattgacatgacttctttttcctttgctact |
260 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
28162624 |
gtgtaggaagatcttgatgaccaaatggacatgacttctttttccattgctact |
28162677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 260
Target Start/End: Original strand, 28186475 - 28186726
Alignment:
| Q |
7 |
tattgcttccgaatcttatatccaaagttaaggagaatcgttgctcaatatttgtagatgcttaacactgaaattcttgttttctatttttaattttatc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28186475 |
tattgcttccgaatcttatatccaaagttaaggagaatcgttgctcaatatttgtagaggcttaacactgaaattcttgttttctatttttaattttatc |
28186574 |
T |
|
| Q |
107 |
tgtagtggaatcagactcttgcaaaatataatatatgatgtaaaatatagtgaggttgatccattataagatatgatatatcatttagtgatttaaatct |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28186575 |
tgtagtggaatcagactcttgcaaaatataatatatggtgtaaa--atagtgaggttgatccattataagatatgatatatcatttagtgatttaaatct |
28186672 |
T |
|
| Q |
207 |
gtgtaggaagatcttgatgaccaaattgacatgacttctttttcctttgctact |
260 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
28186673 |
gtgtaggaagatcttgatgaccaaatggacatgacttctttttccattgctact |
28186726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 28150513 - 28150728
Alignment:
| Q |
7 |
tattgcttccgaatcttatatccaaagttaaggagaatcgttgctcaatatttgtagatgcttaacactgaaattcttgttttctatttttaattttatc |
106 |
Q |
| |
|
|||||||||||||||||| || |||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28150513 |
tattgcttccgaatcttacattcaaacttaagg-gaattgttgctcaatatttgtagatgcttaacactgaaattcttgttttctatttttaattttatc |
28150611 |
T |
|
| Q |
107 |
tgtagtggaatcagactcttgcaaaatataatatatgatgtaaaatatagtgaggttgatccattataagatatgatatatcatttagtgatttaaatct |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28150612 |
tgtagtggaatcagactcttgcaaaatataatatatggtgtaaaatatagtgaggttgatccattataagatatgatatatcatttagtgatttaaatct |
28150711 |
T |
|
| Q |
207 |
gtgtaggaagatcttga |
223 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
28150712 |
gtgtaggaagatcttga |
28150728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 28056971 - 28057220
Alignment:
| Q |
8 |
attgcttccgaatcttatatccaaagttaaggagaatcgttgctcaatatttgtagatgcttaacactgaaattcttgttttctatttttaattttatct |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28056971 |
attgcttctgaatcttatatccaaagttaacaggaattgttgctcaatatttgtagatgcttgacactgaaattcttgttttctatttttaattttatct |
28057070 |
T |
|
| Q |
108 |
gtagtggaatcagactcttgcaaaatataatatatg-------atgtaaaatatagtgaggttgatccattataagatatgatatatcatttagtgattt |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28057071 |
gtagtggaatcagactcttgcaaactataatatatggtgttaattgttaaatatagtgaggttgatccattataagatatgatatatcatttagtgattt |
28057170 |
T |
|
| Q |
201 |
aaatctgtgtaggaagatcttgatgaccaaattgacatgacttctttttc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| || |||||| |
|
|
| T |
28057171 |
aaatctgtgtaggaagatcttgatgaccaaatggacatgagttatttttc |
28057220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 28067396 - 28067645
Alignment:
| Q |
8 |
attgcttccgaatcttatatccaaagttaaggagaatcgttgctcaatatttgtagatgcttaacactgaaattcttgttttctatttttaattttatct |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28067396 |
attgcttctgaatcttatatccaaagttaacaggaattgttgctcaatatttgtagatgcttgacactgaaattcttgttttctatttttaattttatct |
28067495 |
T |
|
| Q |
108 |
gtagtggaatcagactcttgcaaaatataatatatg-------atgtaaaatatagtgaggttgatccattataagatatgatatatcatttagtgattt |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28067496 |
gtagtggaatcagactcttgcaaactataatatatggtgttaattgttaaatatagtgaggttgatccattataagatatgatatatcatttagtgattt |
28067595 |
T |
|
| Q |
201 |
aaatctgtgtaggaagatcttgatgaccaaattgacatgacttctttttc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| || |||||| |
|
|
| T |
28067596 |
aaatctgtgtaggaagatcttgatgaccaaatggacatgagttatttttc |
28067645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 26127590 - 26127512
Alignment:
| Q |
174 |
aagatatgata-tatcatttagtgatttaaatctgtgtaggaagatcttgatgaccaaattgacatgacttctttttcc |
251 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||||||||||||| |||| |||||| | |||||||||||||||| |
|
|
| T |
26127590 |
aagatatgataatatcatttgttgatttgaatctgtgtaggaagatggtgatagccaaatagccatgacttctttttcc |
26127512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 26177640 - 26177562
Alignment:
| Q |
174 |
aagatatgata-tatcatttagtgatttaaatctgtgtaggaagatcttgatgaccaaattgacatgacttctttttcc |
251 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||||||||||||| |||| |||||| | |||||||||||||||| |
|
|
| T |
26177640 |
aagatatgataatatcatttgttgatttgaatctgtgtaggaagatggtgatagccaaatagccatgacttctttttcc |
26177562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University