View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SD37_low_2 (Length: 440)
Name: SD37_low_2
Description: SD37
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SD37_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Original strand, 31859608 - 31860012
Alignment:
| Q |
19 |
agtctagtagatcaatatcaacaacaaagacaaatgttgggtttggcaattcctgtatgctaataaatttagaattcagaccctccggagctggaaagtg |
118 |
Q |
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| T |
31859608 |
agtctagtagatcaatatccacaacaatgacaaatgttgggtttggcaattcctgtatgctaataaatttagaattcagaccctccggagctggaaagtg |
31859707 |
T |
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| Q |
119 |
agcatcaaagtcgttgctttgagttgaagtttttgcttcaaatagttcttttagaatttgtgttaatccattccattcagatgcttccatagtgagcacg |
218 |
Q |
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| T |
31859708 |
agtatcaaagtcgttgttatgagttgaagtttttgcttcaaatagttcttttagaatttgtgttaatccattccattcagatgcttccatagtgagcacg |
31859807 |
T |
|
| Q |
219 |
ccgtttttctgtaaccacttagatgtaattaatctactcatgttgccatgcagtgcaagaagtacctgcattgatatgacacttcttatttcagggtgtg |
318 |
Q |
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| T |
31859808 |
ccgtttttctgtaaccacttagatgtaattaatctactcatgttgccatgcagtgcaagaagtacctgcattgatatgacacttcttatttcagggtgtg |
31859907 |
T |
|
| Q |
319 |
cttattatcttttcagtgaactcagtacaattccaaggtaatactactcaccactaagttattgttagcaaaatcgacttgacagtgttgttctgtggca |
418 |
Q |
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| T |
31859908 |
cttattatcttttcagtgaactcagtacaattccaaggtgatactactcaccattaagttattgttagcaaaatcgacttgacaatgttgttctgtggca |
31860007 |
T |
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| Q |
419 |
tccac |
423 |
Q |
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| T |
31860008 |
tccac |
31860012 |
T |
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Back To:
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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 173 - 290
Target Start/End: Complemental strand, 8869545 - 8869428
Alignment:
| Q |
173 |
aatttgtgttaatccattccattcagatgcttccatagtgagcacgccgtttttctgtaaccacttagatgtaattaatctactcatgttgccatgcagt |
272 |
Q |
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||||||||||| |||||||||||||||||||||||| ||| ||| || ||||| ||||||||| ||||| |||| ||||| |||||| || || ||| |
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| T |
8869545 |
aatttgtgttagtccattccattcagatgcttccattgtgcacaccccttttttggttaaccactttgatgttattattctacccatgtttccttgtagt |
8869446 |
T |
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| Q |
273 |
gcaagaagtacctgcatt |
290 |
Q |
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||||| | |||||||||| |
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| T |
8869445 |
gcaagcaatacctgcatt |
8869428 |
T |
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