View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SD37_low_4 (Length: 389)
Name: SD37_low_4
Description: SD37
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SD37_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 386
Target Start/End: Complemental strand, 2495967 - 2495592
Alignment:
| Q |
11 |
gctttaaccactaccttagaatttatgttaaccagaagatgattatatttttcaggaaggctagtgttcccttcagaatcagcttgaacaatgttatcaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2495967 |
gctttaaccactaccttagaatttatgttaaccagaagatgattatatttttcaggaaggctagtgttcccttcagaatcagcttgaacaatgttatcaa |
2495868 |
T |
|
| Q |
111 |
actttctcttgttattttctgcttcgtttacgtcagtggcttcaacttctttcaaagaagaaagctccttcagacactcatcctgactgagacggggagc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2495867 |
actttctcttgttattttctgcttcgtttacgtcagtggcttcaacttctttcaaagaagaaagctccttcagacactcatcctgactgagacagggagc |
2495768 |
T |
|
| Q |
211 |
attgcctgcacacaaacgtggaaaatctctgaacactgcaacttttttacgaggagcatacgttttagttaaagcctccttcatacaagcaccagcacca |
310 |
Q |
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| T |
2495767 |
attgcctccacacaaacgtggaaaatctctgaacactgcaacttttttacgaggagcgtaccttttagttaaagcctccttcatacaagcaccagcacca |
2495668 |
T |
|
| Q |
311 |
ccaatattgatagtggacaaagaggactttgagtcatcagacatagctgcctcgccatctggatacgatgcctttg |
386 |
Q |
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| T |
2495667 |
ccaatattgatagtggacaaagaggattttgagtcatcaggcgtagctgcctcgccatctggatacgatgcctttg |
2495592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 386
Target Start/End: Complemental strand, 2512140 - 2511755
Alignment:
| Q |
7 |
ttccgctttaaccactaccttagaatttatgttaaccagaagatgat------tatatttttcaggaaggctagtgttcccttcagaatcagcttgaaca |
100 |
Q |
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| T |
2512140 |
ttccactttaaccactgccttagaatttatgttaacctgatgatgatgatgattatgtttttcaggaagtttagggttccctgcagaatcagcttgaaca |
2512041 |
T |
|
| Q |
101 |
atgttatcaaactttctcttgttattttctgcttcgtttacgtcagtggcttcaacttctttcaaagaagaaagctccttcagacactcatcctgactga |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2512040 |
atgttatcaaactttctcttgttattttctgcttcttttacgtcagtgtctgcaacttctttcaaagaagaaagctcctttagacactcatcctgactga |
2511941 |
T |
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| Q |
201 |
gacggggagcattgcctgcacacaaacgtggaaaatctctgaacactgcaacttttttacgaggagcatacgttttagttaaagcctccttcatacaagc |
300 |
Q |
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| T |
2511940 |
gacggggagcattgcctccacataaacttggaaaacctctgaactctgcaactcttttacgagtagcatacctgatagttaaagcctccttcatacaagg |
2511841 |
T |
|
| Q |
301 |
accagcaccaccaatattgatagtggacaaagaggactttgagtcatcagacatagctgcctcgccatctggatacgatgcctttg |
386 |
Q |
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| T |
2511840 |
accggaaccaccaatattgatattggacaacgaggattttgagtcgtcagacatagctgcctcgccaactggatatgatgcctttg |
2511755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 2510400 - 2510289
Alignment:
| Q |
7 |
ttccgctttaaccactaccttagaatttatgttaaccagaagatgattatatttttcaggaaggctagtgttcccttcagaatcagcttgaacaatgtta |
106 |
Q |
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|||||||||||||||| |||||||||||||||||||| || ||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
2510400 |
ttccgctttaaccactgccttagaatttatgttaacctga---tgattatgttttttaggaagtttagcgttcccttcagaatcagcttgaacaatgtta |
2510304 |
T |
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| Q |
107 |
tcaaactttctcttg |
121 |
Q |
| |
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||||||||||||||| |
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| T |
2510303 |
tcaaactttctcttg |
2510289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 2510277 - 2510237
Alignment:
| Q |
153 |
caacttctttcaaagaagaaagctccttcagacactcatcc |
193 |
Q |
| |
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||||||||||||||||||||||||| || |||||||||||| |
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| T |
2510277 |
caacttctttcaaagaagaaagctcttttagacactcatcc |
2510237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 77 - 373
Target Start/End: Complemental strand, 4258419 - 4258123
Alignment:
| Q |
77 |
ttcccttcagaatcagcttgaacaatgttatcaaactttctcttgttattttctgcttcgtttacgtcagtggcttcaacttctttcaaagaagaaagct |
176 |
Q |
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||||||||| ||||||||| ||||| ||| |||||||||| |||||||||||| |||| | || |||||| ||| |||||||||||||||||| |||| |
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| T |
4258419 |
ttcccttcaaaatcagcttcaacaaggttggcaaactttcttttgttattttctacttcttgtaggtcagtagctgcaacttctttcaaagaagcgagct |
4258320 |
T |
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| Q |
177 |
ccttcagacactcatcctgactgagacggggagcattgcctgcacacaaacgtggaaaatctctgaacactgcaacttttttacgaggagcatacgtttt |
276 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||| | |||| | ||||||||||||||| ||| ||||||||||||||||||||| ||| |||| |
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| T |
4258319 |
cctttagacactcatcctggctgagacggggagcattgcgtccacatagacgtggaaaatctcttaacgctgcaacttttttacgaggagggtacctttt |
4258220 |
T |
|
| Q |
277 |
agttaaagcctccttcatacaagcaccagcaccaccaatattgatagtggacaaagaggactttgagtcatcagacatagctgcctcgccatctgga |
373 |
Q |
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|||||||||||||||||||||||||| | |||||| ||||||||| ||||||| ||||| ||||||| ||||||||||||| |||||||| ||||| |
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| T |
4258219 |
agttaaagcctccttcatacaagcactggaaccacctatattgatattggacaacgaggattttgagttatcagacatagctacctcgccaactgga |
4258123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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