View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5572B-LTR4-TNT-insertion-1 (Length: 306)
Name: SO5572B-LTR4-TNT-insertion-1
Description: SO5572B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5572B-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 37715421 - 37715183
Alignment:
| Q |
10 |
tcaagtggcagatggtttggtcaaatttggtcttccttagatgggcagagtataatttttaatgttgtgcttgtagattgttccgttgttattcattaaa |
109 |
Q |
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| T |
37715421 |
tcaagtggcagatggtttggtcaaatttggtcttccttagatgggcagagtataatttttaatgttgtgcttgtagattgttccgttgttattcattaaa |
37715322 |
T |
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| Q |
110 |
aagtatgtatttgattttggaagagctggggaactcttgtaagatttgatgataaaaagcaactcttttaatttggttattacggggagggaatacattc |
209 |
Q |
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| T |
37715321 |
aagtatgtatttgattttggaagagctggggaactcttgtaagatttgatgataaaaagcaactcttttaatttggttattacggggagggaatacattc |
37715222 |
T |
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| Q |
210 |
aagggttgcatgtcttcttctatttaagagtttcaattg |
248 |
Q |
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| T |
37715221 |
aagggttgcatgtcttcttctatttaagagtttcaattg |
37715183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 297
Target Start/End: Complemental strand, 7119067 - 7119028
Alignment:
| Q |
258 |
tcgaatcgtggatgtcttctttgctagtattatttaattg |
297 |
Q |
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| T |
7119067 |
tcgaatcgtggatgtcttctttgctagtattatttaattg |
7119028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 297
Target Start/End: Complemental strand, 7131545 - 7131506
Alignment:
| Q |
258 |
tcgaatcgtggatgtcttctttgctagtattatttaattg |
297 |
Q |
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| T |
7131545 |
tcgaatcgtggatgtcttctttgctagtattatttaattg |
7131506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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