View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: SO5572B-LTR4-TNT-insertion-10 (Length: 526)

Name: SO5572B-LTR4-TNT-insertion-10
Description: SO5572B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] SO5572B-LTR4-TNT-insertion-10
SO5572B-LTR4-TNT-insertion-10
[»] chr5 (3 HSPs)
chr5 (7-519)||(15026885-15027397)
chr5 (136-253)||(34272243-34272361)
chr5 (24-129)||(42954776-42954881)
[»] chr8 (6 HSPs)
chr8 (127-253)||(17011698-17011822)
chr8 (127-253)||(17545379-17545503)
chr8 (24-130)||(11364459-11364565)
chr8 (187-250)||(39721340-39721403)
chr8 (194-252)||(9618053-9618111)
chr8 (188-222)||(32848127-32848161)
[»] chr2 (5 HSPs)
chr2 (131-281)||(31380469-31380623)
chr2 (141-255)||(12324427-12324542)
chr2 (157-251)||(5699923-5700018)
chr2 (89-130)||(5700165-5700206)
chr2 (187-260)||(8485905-8485978)
[»] chr6 (4 HSPs)
chr6 (24-129)||(13436809-13436914)
chr6 (187-252)||(6919323-6919388)
chr6 (187-240)||(30062991-30063044)
chr6 (187-253)||(10086064-10086130)
[»] chr7 (4 HSPs)
chr7 (24-110)||(29292165-29292251)
chr7 (131-253)||(29367421-29367544)
chr7 (452-509)||(21904901-21904958)
chr7 (157-253)||(39773169-39773266)
[»] chr4 (3 HSPs)
chr4 (187-233)||(4848715-4848761)
chr4 (187-254)||(5198944-5199009)
chr4 (189-254)||(23406516-23406581)
[»] chr3 (1 HSPs)
chr3 (41-129)||(46506127-46506215)
[»] chr1 (4 HSPs)
chr1 (187-282)||(4625226-4625326)
chr1 (200-284)||(29275881-29275966)
chr1 (189-253)||(12900712-12900776)
chr1 (194-249)||(32897267-32897322)


Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 7 - 519
Target Start/End: Original strand, 15026885 - 15027397
Alignment:
Q  7 aaaaaaggttatgattctgtaagggttcctaaatttgagagtgtaataaattgataattttaaattaattattgaatgaagagtaaaattgatagattag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15026885 aaaaaaggttatgattctgtaagggttcctaaatttgagagtgtaataaattgataattttaaattaattattgaatgaagagtaaaattgatagattag 15026984  T
Q  107 aactcaattaaaattaatgttctttttcactatatatgcacaacttaaggttccttgattttaggatcactagccgagtgccatttacctcaaccaatta 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15026985 aactcaattaaaattaatgttctttttcactatatatgcacaacttaaggttccttgattttaggatcactagccgagtgtcatttacctcaaccaatta 15027084  T
Q  207 tgttatgccaaatgtattttctcatgtgttattttggatcataacattactcccccattcaaatcaaccttgtcctcacctcaaggttgtgatgtagtca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15027085 tgttatgccaaatgtattttctcatgtgttattttggatcataacattactcccccattcaaatcaaccttgtcctcacctcaaggttgtgatgtagtca 15027184  T
Q  307 taaagtcacctatagatgtgtatcctgcaatttcatctctatgtaaacctttccacttctagttgacaagttagaaccaacaaaaatagcataataaatg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15027185 taaagtcacctatagatgtgtatcctgcaatttcatctctatgtaaacctttccacttctagttgacaagttagaaccaacaaaaatagcataataaatg 15027284  T
Q  407 tcacctatagatgttgaccatttaatttcgttcagccaatcatgaatcatgctaacaaaaattgcacttggactagaaacaatatttgtagctagtgatt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15027285 tcacctatagatgttgaccatttaatttcgttcagccaatcatgaatcatgctaacaaaaattgcacttggactagaaacaatatttgtagctagtgatt 15027384  T
Q  507 ttttctgcaattg 519  Q
    |||||||||||||    
T  15027385 ttttctgcaattg 15027397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 34272361 - 34272243
Alignment:
Q  136 ctatatatgcacaacttaaggttccttgattttaggatcactagccgagtg-ccatttacctcaaccaattatgttatgccaaatgtattttctcatgtg 234  Q
    |||| |||||||||  ||||  |||||||||||||||||||||| |   || |||||||||| |||||||||||||||||||||||||||||||||| ||    
T  34272361 ctatttatgcacaatctaagcatccttgattttaggatcactagtcacatgtccatttacctaaaccaattatgttatgccaaatgtattttctcatatg 34272262  T
Q  235 ttattttggatcataacat 253  Q
     ||||||| ||||||||||    
T  34272261 ctattttgaatcataacat 34272243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 42954776 - 42954881
Alignment:
Q  24 tgtaagggttcctaaatttgagagtgtaataaattgataattttaaattaattattgaatgaagagtaaaattgatagattagaactcaattaaaattaa 123  Q
    ||||| |||| ||||| |||| | || |||||| |||||||| | |||| ||| |  ||||||  ||||||||||||||||||||||||||||||||| |    
T  42954776 tgtaatggtttctaaaattgataatggaataaaatgataattgtgaattgattgtgaaatgaaaggtaaaattgatagattagaactcaattaaaattga 42954875  T
Q  124 tgttct 129  Q
    ||||||    
T  42954876 tgttct 42954881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 127 - 253
Target Start/End: Original strand, 17011698 - 17011822
Alignment:
Q  127 tctttttcactatatatgcacaacttaaggttccttgattttaggatcactagccgagtgccatttacctcaaccaattatgttatgccaaatgtatttt 226  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||| ||||| ||    
T  17011698 tctttttcactattt-tgcacaacttaaggttccttgattttaggatcactagccaagtgacatt-acctcaaccaattatgttatgccaagtgtatctt 17011795  T
Q  227 ctcatgtgttattttggatcataacat 253  Q
    ||||| || ||||||||||||||||||    
T  17011796 ctcatttgctattttggatcataacat 17011822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 127 - 253
Target Start/End: Complemental strand, 17545503 - 17545379
Alignment:
Q  127 tctttttcactatatatgcacaacttaaggttccttgattttaggatcactagccgagtgccatttacctcaaccaattatgttatgccaaatgtatttt 226  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||| ||||| ||    
T  17545503 tctttttcactattt-tgcacaacttaaggttccttgattttaggatcactagccaagtgacatt-acctcaaccaattatgttatgccaagtgtatctt 17545406  T
Q  227 ctcatgtgttattttggatcataacat 253  Q
    ||||| || ||||||||||||||||||    
T  17545405 ctcatttgctattttggatcataacat 17545379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 11364459 - 11364565
Alignment:
Q  24 tgtaagggttcctaaatttgagagtgtaataaattgataattttaaattaattattgaatgaagagtaaaattgatagattagaactcaattaaaattaa 123  Q
    ||||| |||||||||| |||||| ||| |||||||||||||| ||||||  ||||| ||| ||  ||||||||||  ||||||||| |||||||||||      
T  11364459 tgtaatggttcctaaaattgagaatgtgataaattgataattgtaaattgtttattaaatcaaaggtaaaattgagggattagaacccaattaaaattgg 11364558  T
Q  124 tgttctt 130  Q
    |||||||    
T  11364559 tgttctt 11364565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 39721340 - 39721403
Alignment:
Q  187 ccatttacctcaaccaattatgttatgccaaatgtattttctcatgtgttattttggatcataa 250  Q
    ||||||||||| ||||||||| ||||| ||| |||||||| ||||||| ||||||| |||||||    
T  39721340 ccatttacctcgaccaattatattatgtcaagtgtattttttcatgtgctattttgaatcataa 39721403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 9618053 - 9618111
Alignment:
Q  194 cctcaaccaattatgttatgccaaatgtattttctcatgtgttattttggatcataaca 252  Q
    ||||||||||||||| |||| |||||||||||  |||| || |||||| ||||||||||    
T  9618053 cctcaaccaattatgatatgtcaaatgtatttcttcatatgctattttagatcataaca 9618111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 32848127 - 32848161
Alignment:
Q  188 catttacctcaaccaattatgttatgccaaatgta 222  Q
    ||||||||||||||||| |||||||||||||||||    
T  32848127 catttacctcaaccaatgatgttatgccaaatgta 32848161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 131 - 281
Target Start/End: Complemental strand, 31380623 - 31380469
Alignment:
Q  131 tttcactatatatgcacaacttaaggttccttgattttaggatcactagccgagtg-ccatttacctcaa--ccaattatgttatgccaaatgtattttc 227  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||| | |||||  ||| |||||||  ||||  ||||||||||||||| || ||||||| |    
T  31380623 tttcactatttatgcacaactcaaggttcattgattttaggatgattagccacgtgtccatttatatcaaccccaattatgttatgctaagtgtatttcc 31380524  T
Q  228 tcatgtgttattttggatcataacattac-tcccccattcaaatcaaccttgtcc 281  Q
     ||| || || |||| ||||||||||||| ||||||||| |||||||||||||||    
T  31380523 acatatgctactttgaatcataacattacttcccccattaaaatcaaccttgtcc 31380469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 141 - 255
Target Start/End: Complemental strand, 12324542 - 12324427
Alignment:
Q  141 tatgcacaacttaaggttccttgattttaggatcactagccgagtg-ccatttacctcaaccaattatgttatgccaaatgtattttctcatgtgttatt 239  Q
    ||||||||||| |||||| |||||||||| ||||||  |||  ||  |||||||||||||| |||||||||| | ||||||||||| ||||| || ||||    
T  12324542 tatgcacaactcaaggttacttgattttaagatcacacgccacgtctccatttacctcaactaattatgttaggtcaaatgtatttcctcatatgctatt 12324443  T
Q  240 ttggatcataacatta 255  Q
    ||| ||||||||||||    
T  12324442 ttgaatcataacatta 12324427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 5700018 - 5699923
Alignment:
Q  157 ttccttgattttaggatcactagccgagtgc-catttacctcaaccaattatgttatgccaaatgtattttctcatgtgttattttggatcataac 251  Q
    ||||||||||||||||||||||| |  |||  ||||||||| |||||||||||||||||||| ||||||| || || || ||||||| ||||||||    
T  5700018 ttccttgattttaggatcactagtcacgtgttcatttaccttaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataac 5699923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 5700206 - 5700165
Alignment:
Q  89 gtaaaattgatagattagaactcaattaaaattaatgttctt 130  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  5700206 gtaaaattgatagattagaactcaattaaaattgatgttctt 5700165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 8485905 - 8485978
Alignment:
Q  187 ccatttacctcaaccaattatgttatgccaaatgtattttctcatgtgttattttggatcataacattactccc 260  Q
    ||||||||||||| ||||||||||||||||||||||| | ||||  || |||| || ||||| |||||||||||    
T  8485905 ccatttacctcaatcaattatgttatgccaaatgtatatcctcaaatgctattctgaatcatgacattactccc 8485978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 13436914 - 13436809
Alignment:
Q  24 tgtaagggttcctaaatttgagagtgtaataaattgataattttaaattaattattgaatgaagagtaaaattgatagattagaactcaattaaaattaa 123  Q
    ||||| |||||||||| |||| | || |||||| |||||||| | |||| ||| |  ||||||  |||||||||||||||| |||||||||||||||| |    
T  13436914 tgtaatggttcctaaaattgataatggaataaaatgataattgtgaattgattgtgaaatgaaaggtaaaattgatagattggaactcaattaaaattga 13436815  T
Q  124 tgttct 129  Q
    ||||||    
T  13436814 tgttct 13436809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 6919388 - 6919323
Alignment:
Q  187 ccatttacctcaaccaattatgttatgccaaatgtattttctcatgtgttattttggatcataaca 252  Q
    |||||| |||||||||||||||||||||||| ||||||||| ||| || ||| ||| |||||||||    
T  6919388 ccatttgcctcaaccaattatgttatgccaagtgtattttcccatatgctatattgaatcataaca 6919323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 30063044 - 30062991
Alignment:
Q  187 ccatttacctcaaccaattatgttatgccaaatgtattttctcatgtgttattt 240  Q
    ||||||||||||||||||||  || |||||| |||||||||||||||| |||||    
T  30063044 ccatttacctcaaccaattacattttgccaagtgtattttctcatgtgctattt 30062991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 10086130 - 10086064
Alignment:
Q  187 ccatttacctcaaccaattatgttatgccaaatgtattttctcatgtgttattttggatcataacat 253  Q
    ||||||| ||||||||||||| || | | |  |||||||||||||||| ||||||| ||||||||||    
T  10086130 ccatttatctcaaccaattatatttttcaatgtgtattttctcatgtgctattttgaatcataacat 10086064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 29292165 - 29292251
Alignment:
Q  24 tgtaagggttcctaaatttgagagtgtaataaattgataattttaaattaattattgaatgaagagtaaaattgatagattagaact 110  Q
    ||||| |||| ||||| |||| ||||| |||||||||||||| | |||| |||||| | ||||  ||||||||||||||||||||||    
T  29292165 tgtaatggtttctaaaattgaaagtgtgataaattgataattgtgaattgattattaagtgaaaggtaaaattgatagattagaact 29292251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 131 - 253
Target Start/End: Original strand, 29367421 - 29367544
Alignment:
Q  131 tttcactatatatgcacaacttaaggttccttgattttaggatcactagccgagtgcc-atttacctcaaccaattatgttatgccaaatgtattttctc 229  Q
    ||||||||| |||| | |||  || |||| || |||||||||| |||||||| || || |||||| |||||||||||| |||| | || ||||||| |||    
T  29367421 tttcactatttatgtataacccaaagttctttaattttaggattactagccgcgtacccatttacttcaaccaattatattatactaagtgtatttcctc 29367520  T
Q  230 atgtgttattttggatcataacat 253  Q
    || | |||||||| ||||||||||    
T  29367521 atatattattttgaatcataacat 29367544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 452 - 509
Target Start/End: Complemental strand, 21904958 - 21904901
Alignment:
Q  452 atcatgctaacaaaaattgcacttggactagaaacaatatttgtagctagtgattttt 509  Q
    |||| |||||||||| ||||||||||| ||||||| ||| || |||||||||||||||    
T  21904958 atcaagctaacaaaacttgcacttggattagaaaccataattctagctagtgattttt 21904901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 39773266 - 39773169
Alignment:
Q  157 ttccttgattttaggatcactagccgagtg-ccatttacctcaaccaattatgttatgccaaatgtattttctcatgtgttattttggatcataacat 253  Q
    |||||| ||||||||||||||||||   || ||||||  ||||||||||||||||||||||  |||| || || || ||| |||||| ||||||||||    
T  39773266 ttccttaattttaggatcactagccacatgtccatttttctcaaccaattatgttatgccatgtgtaattccttatatgtcattttgaatcataacat 39773169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 4848761 - 4848715
Alignment:
Q  187 ccatttacctcaaccaattatgttatgccaaatgtattttctcatgt 233  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||    
T  4848761 ccatttgcgtcaaccaattatgttatgccaaatgtattttctcatgt 4848715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 5198944 - 5199009
Alignment:
Q  187 ccatttacctcaaccaattatgttatgccaaatgtattttctcatgtgttattttggatcataacatt 254  Q
    |||||| |||||||||||||||||||||| | ||||||||||||  |||||||||  |||||||||||    
T  5198944 ccatttgcctcaaccaattatgttatgccgagtgtattttctca--tgttattttcaatcataacatt 5199009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 23406581 - 23406516
Alignment:
Q  189 atttacctcaaccaattatgttatgccaaatgtattttctcatgtgttattttggatcataacatt 254  Q
    ||||| ||||||||||||  || | |||| |||||||||||||||| ||||||| |||||||||||    
T  23406581 atttagctcaaccaattacatttttccaagtgtattttctcatgtgctattttgaatcataacatt 23406516  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 46506215 - 46506127
Alignment:
Q  41 ttgagagtgtaataaattgataattttaaattaattattgaatgaagagtaaaattgatagattagaactcaattaaaattaatgttct 129  Q
    |||| |||||||||||| |||| ||  |||||||||||| ||| ||   ||||||||||||||||||| |||||||||| | |||||||    
T  46506215 ttgatagtgtaataaatggatagttggaaattaattattcaatcaaagataaaattgatagattagaaatcaattaaaacttatgttct 46506127  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 282
Target Start/End: Complemental strand, 4625326 - 4625226
Alignment:
Q  187 ccatttacctcaaccaattatgttatgc-----caaatgtattttctcatgtgttattttggatcataacattactcccccattcaaatcaaccttgtcc 281  Q
    |||||||||||||||||||||||||||      ||||| || || || || ||| |||||| || ||||||||||||||||||| |||||||||| ||||    
T  4625326 ccatttacctcaaccaattatgttatgttatgtcaaatataattccttatatgtcattttgaataataacattactcccccattaaaatcaacctcgtcc 4625227  T
Q  282 t 282  Q
    |    
T  4625226 t 4625226  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 200 - 284
Target Start/End: Complemental strand, 29275966 - 29275881
Alignment:
Q  200 ccaattatgttatgccaaa--tgtattttctcatgtgttattttggatcataacattactcccccattcaaatcaaccttgtcctca 284  Q
    ||||||||||||||||| |  |||||||||| ||  | ||||||| ||||||||||||| |||||||| |||||||||||| |||||    
T  29275966 ccaattatgttatgccacaagtgtattttcttataggatattttgaatcataacattac-cccccattaaaatcaaccttgacctca 29275881  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 12900776 - 12900712
Alignment:
Q  189 atttacctcaaccaattatgttatgccaaatgtattttctcatgtgttattttggatcataacat 253  Q
    ||||| ||||||||||||  || |||||| |||||||||||||||| ||| ||| ||||||||||    
T  12900776 atttagctcaaccaattacattttgccaagtgtattttctcatgtgctatcttgaatcataacat 12900712  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 32897322 - 32897267
Alignment:
Q  194 cctcaaccaattatgttatgccaaatgtattttctcatgtgttattttggatcata 249  Q
    |||||||||||| ||||||||||| ||||||||||||| |  ||||||| ||||||    
T  32897322 cctcaaccaattctgttatgccaagtgtattttctcatatagtattttgaatcata 32897267  T

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