View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5572B-LTR4-TNT-insertion-12 (Length: 455)
Name: SO5572B-LTR4-TNT-insertion-12
Description: SO5572B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5572B-LTR4-TNT-insertion-12 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 51814275 - 51813975
Alignment:
| Q |
8 |
ccatctgaaacctatttgggcttttcacagattgaatttggataggtcctgatcggttcaaattcgaggtacaaacagcttgtttaggcaaaacttcaca |
107 |
Q |
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| T |
51814275 |
ccatctgaaacctatttgggcttttcacagattgaatttggataggtcctgatcggttcaaattcgaggtacaaacagcatgtttaggcaaaacttcaca |
51814176 |
T |
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| Q |
108 |
tgttttattgttatcaagagctgccacaattttgagaccaacaccaccaaggtcatagttttttagacctcttggtgattgcatctttgtgtctaatggt |
207 |
Q |
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| T |
51814175 |
tgttttattgttatcaagagctgccacaattttgagaccaacaccaccaaggtcatagttttttagacctcttggtgattgcatctttgtgtctaatggt |
51814076 |
T |
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| Q |
208 |
cctcttgggcttccggtggtgtccatcatacggccaccagagaccaatagttccgacaattttccgatcattggagagggtctcttcctcaacatgatcg |
307 |
Q |
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| T |
51814075 |
cctcttgggcttccggtggtgtccatcatacggccaccagagaccaatagttccgacaattttccgatcattggagagggtctcttcctcaacatgatcg |
51813976 |
T |
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| Q |
308 |
g |
308 |
Q |
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| T |
51813975 |
g |
51813975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 390 - 445
Target Start/End: Complemental strand, 51813893 - 51813838
Alignment:
| Q |
390 |
gtagtgggtgtctttataagaccaactataaagttatcttaggggtcttaatatta |
445 |
Q |
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| T |
51813893 |
gtagtgggtgtctttataagaccaactataaagttatcttaggggtcttaatatta |
51813838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 18716517 - 18716595
Alignment:
| Q |
118 |
ttatcaagagctgccacaattttgagaccaacaccaccaaggtcatagttttttagacctcttggtgattgcatctttg |
196 |
Q |
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| T |
18716517 |
ttatcaagagctaccacaattccaagaccaacaccaccaaattcatagctttttaatccttttggtgattgaatctttg |
18716595 |
T |
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