View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5572B-LTR4-TNT-insertion-13 (Length: 636)
Name: SO5572B-LTR4-TNT-insertion-13
Description: SO5572B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5572B-LTR4-TNT-insertion-13 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 8 - 420
Target Start/End: Original strand, 26526124 - 26526536
Alignment:
| Q |
8 |
caatagttttgttcggtaaataaagtcgtagtattatgtttttgtttgttcttttgttaatatctgattccgacattctatttactaatgaatagtttct |
107 |
Q |
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| T |
26526124 |
caatagttttgttcggtaaataaagtcgtagtattatgtttttgtttgttcttttgttaatatctgattccgacattctatttactaatgaatagtttct |
26526223 |
T |
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| Q |
108 |
catttgtatttttgtttggcattaattgtattgtacagaaacaaaagataggtcaatatataacaacccaaatttataaataaataacccaaattatgaa |
207 |
Q |
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| T |
26526224 |
catttgtatttttgtttggcattaattgtattgtacagaaacaaaagataggtcaatatataacaacccaaatttataaataaataacccaaattatgaa |
26526323 |
T |
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| Q |
208 |
acaagtactgagtcaatatcatacacattattagtaatgattaagaaattatgttaactaccccaattatgatattattctaattaaagttgttgtgaat |
307 |
Q |
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| T |
26526324 |
acaagtactgagtcaatatcatacacattattagtaatgattaagaaattatgttaactaccccaattatgatattattctaattaaagttgttgtgaat |
26526423 |
T |
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| Q |
308 |
tttccataggacaaagaaaataatggagttgatggcgtcaacaaattccaatcaggggaagatgaggatgagaaggaacaatttagtccagtatctgttt |
407 |
Q |
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| T |
26526424 |
tttccataggacaaagaaaataatggagttgatggcgtcaacaaattccaatcaggggaagatgaggatgagaaggaacaatttagtccagtatctgttt |
26526523 |
T |
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| Q |
408 |
tagatccactctt |
420 |
Q |
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| T |
26526524 |
tagatccactctt |
26526536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 485 - 628
Target Start/End: Original strand, 26526601 - 26526744
Alignment:
| Q |
485 |
gagtgtagctacgccaatgtacaaagtatgtcattattattatttattttttagaataatcaatcaatttagtagataaaatatatatgaagcacgaaca |
584 |
Q |
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| T |
26526601 |
gagtgtagctacgccaatgtacaaagtatgtcattattattatttattttttagaataatcaatcaatttagtagataaaatatatatgaagcacgaaca |
26526700 |
T |
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| Q |
585 |
ctcatcgaatcagacgtgtcctgatatcggacatgagtcgaatt |
628 |
Q |
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| T |
26526701 |
ctcatcgaatcagacgtgtcctgatatcggacatgagtcgaatt |
26526744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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