View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5572B-LTR4-TNT-insertion-14 (Length: 245)
Name: SO5572B-LTR4-TNT-insertion-14
Description: SO5572B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5572B-LTR4-TNT-insertion-14 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 33884788 - 33885015
Alignment:
| Q |
8 |
catattattctcttaatcctaaacgcatctccacttgtttcctctccattccaacatcacttcttcttccttaaacacttatatgtctttgtctctttaa |
107 |
Q |
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| T |
33884788 |
catattattctcttaatcctaaacgcatctccacttgtttcctctccattccaacatcacttcttcttccttaaacacttatatgtctttgtctctttaa |
33884887 |
T |
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| Q |
108 |
tttgatgtagtactttctattatataaccaatcatgaatgtttagtcaacttttcttacataatagaaaaatgattctaaaaagataaaatattgaagtt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33884888 |
tttgatgtagtactttctattatataaccaatcatgaatgtttagtcaacttttcttacataatagaaaaatgattctaaaaagataaaatattgaagtt |
33884987 |
T |
|
| Q |
208 |
tgttaaaacaagtgtcttttgtatatta |
235 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
33884988 |
tgttaaaacaagtgtcttttgtatatta |
33885015 |
T |
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