View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5572B-LTR4-TNT-insertion-2 (Length: 528)
Name: SO5572B-LTR4-TNT-insertion-2
Description: SO5572B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5572B-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 10 - 519
Target Start/End: Original strand, 40121609 - 40122118
Alignment:
| Q |
10 |
taccactgctaagaatattgttccttctcttccaatgaaaaatctatcaagcagagacaatgttgaagtgtcctctccattagtgccggtgagcactact |
109 |
Q |
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| T |
40121609 |
taccactgctaagaatattgttccttctcttccaatgaaaaatctatcaagcagagacaatgttgaagtgtcctctccattagtgccggtgagcactact |
40121708 |
T |
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| Q |
110 |
actaccagctggtatcaatactttcaagctgaatattttggaaagaattatgaggaaaaggaggtaataacacctagtttgttggaaatgaatttgttct |
209 |
Q |
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| T |
40121709 |
actaccagctggtatcaatactttcaagctgaatattttggaaagaattatgaggaaaaggaggtaataacacctagtttgttggaaatgaatttgttct |
40121808 |
T |
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| Q |
210 |
caccaacttcttttggtaactggtgttttgttcctcccatcatgaacccaagagtttgatctgtttggaagctgttctttagctaggtttttagaatgga |
309 |
Q |
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| T |
40121809 |
caccaacttcttttggtaactggtgttttgttcctcccatcatgaacccaagagtttgatctgtttggaagctgttctttagctaggtttttagaatgga |
40121908 |
T |
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| Q |
310 |
ttcatttgaattgtacgggacgtcgattagaattttcagctgctgcgcgtaaactgttcttctatatacatgtaattttgagttcaccaaatgccaaaaa |
409 |
Q |
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| T |
40121909 |
ttcatttgaattgtacgggacgtcgattagaattttcagctgctgcgcgtaaactgttcttctatatacatgtaattttgagttcaccaaatgccaaaaa |
40122008 |
T |
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| Q |
410 |
gactatacattcattaactgatattgcagattgctgttatcttaaacttatatccagcagctatgatacttggttcattttgacattgaataatatgtct |
509 |
Q |
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| T |
40122009 |
gactatacattcattaactgatattgcagattgctgttatcttaaacttatatccagcagctatgatacttggttcattttgacattgaataatatgtct |
40122108 |
T |
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| Q |
510 |
tatccaattg |
519 |
Q |
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| T |
40122109 |
tatccaattg |
40122118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 32 - 294
Target Start/End: Original strand, 40125283 - 40125545
Alignment:
| Q |
32 |
ccttctcttccaatgaaaaatctatcaagcagagacaatgttgaagtgtcctctccattagtgccggtgagcactactactaccagctggtatcaatact |
131 |
Q |
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| T |
40125283 |
ccttcccttccaatgaaaaacttcacaaacaaagacactgttgaagtgtcccctccattagagccagtgagtactactaata---gctggtatcagtact |
40125379 |
T |
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| Q |
132 |
ttcaagctgaatattttggaaagaattatga---ggaaaaggaggtaataacacctagtttgttggaaatgaatttgttctcaccaacttcttttggtaa |
228 |
Q |
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| T |
40125380 |
ttcaagctgaatattttggaaagaataatgatcaggaagaggaggtaataacccctagtttgttggaattgaatttgctctcaccaacttcttttggtaa |
40125479 |
T |
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| Q |
229 |
ctggtgttttgttcctcccatcatgaacccaagagtttgatctgtttggaagctgttctttagcta |
294 |
Q |
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| T |
40125480 |
ctggtgttttgttcctcccatcatcaccccaagagtttgatttgtttggaagctgctctttggcta |
40125545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 32 - 289
Target Start/End: Original strand, 40092811 - 40093068
Alignment:
| Q |
32 |
ccttctcttccaatgaaaaatctatcaagcagagacaatgttgaagtgtcctctccattagtgccggtgagcactactactaccagctggtatcaatact |
131 |
Q |
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| T |
40092811 |
ccttcccttccaatgaaaaacttcacaaacaaagacagtgttgaagtgtcccctccattagagccagtgagtactactaata---gctggtatcagtact |
40092907 |
T |
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| Q |
132 |
ttcaagctgaatattttggaaagaattatga---ggaaaaggaggtaataacacctagtttgttggaaatgaatttgttctcaccaacttcttttggtaa |
228 |
Q |
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| T |
40092908 |
ttcaagctgaatattttggaaagaataatgatcaggaagaggaggtaataacccctagtttgttggaattgaatttgctctcaccaacttcttttggtaa |
40093007 |
T |
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| Q |
229 |
ctggtgttttgttcctcccatcatgaacccaagagtttgatctgtttggaagctgttcttt |
289 |
Q |
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| T |
40093008 |
ctggtgttttgttcctcccatcatcaccccaagagtttgatttgtttggaggctgttcttt |
40093068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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