View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5572B-LTR4-TNT-insertion-3 (Length: 423)
Name: SO5572B-LTR4-TNT-insertion-3
Description: SO5572B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5572B-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 37 - 413
Target Start/End: Complemental strand, 4185553 - 4185177
Alignment:
| Q |
37 |
tatgctatatgaagatgattatgtctatgcaaaatatttttcattttactttgatagaatatgcgaaatatctccagcctcaatgtttgtttgatcctga |
136 |
Q |
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| T |
4185553 |
tatgctatatgaagatgattatgtctatgcaaaatatttttcattttactttgatagaatatgcgaaatatctccagcctcaatgtttgtttgatcctga |
4185454 |
T |
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| Q |
137 |
tannnnnnnaatgatttcatacctactagtattagcatacatgcatatcactccgtctgcacaattgttaaatatcacttaagattttgaatttaattca |
236 |
Q |
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| T |
4185453 |
tatttttttaatgatttcatacctactagtattagtatacatgcatatcactccgtctgcacaattgttaaatatcacttaagattttgaatttaattca |
4185354 |
T |
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| Q |
237 |
tataaatcgtcggtgcaaaacaaatttacactgtcaatcaatcgcaaccatcagatcattataaatgttagacttctatcgtaacggcttttaaagtata |
336 |
Q |
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| T |
4185353 |
tataaatcgtcggtgcaaaacaaatttacactgtcaatcaatcgcaaccatcagatcattataaatgttagacttttatcgtaacggcttttaaagtata |
4185254 |
T |
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| Q |
337 |
aatgaatggttgtaaagtgttgagtgtaaaactttttacactaaaagtgcatgaacattaaactcatatccttatta |
413 |
Q |
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| T |
4185253 |
aatgaatggttgtaaagtgttgagtgtaaaactttttacactaaaagtgcatgaacattaaactcatatccttatta |
4185177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 400
Target Start/End: Original strand, 43207909 - 43207950
Alignment:
| Q |
359 |
agtgtaaaactttttacactaaaagtgcatgaacattaaact |
400 |
Q |
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| T |
43207909 |
agtgaaaaactttttacaccaaaagtgcatgaaaattaaact |
43207950 |
T |
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