View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5572B-LTR4-TNT-insertion-4 (Length: 623)
Name: SO5572B-LTR4-TNT-insertion-4
Description: SO5572B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5572B-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 607; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 8 - 614
Target Start/End: Original strand, 23624048 - 23624654
Alignment:
| Q |
8 |
cttagacagctcaacttttccaagatcaaatttaaacaagttattagaaatatgtatctcccttgttgctttgttagaaccaaaaagcatagaagcatca |
107 |
Q |
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| T |
23624048 |
cttagacagctcaacttttccaagatcaaatttaaacaagttattagaaatatgtatctcccttgttgctttgttagaaccaaaaagcatagaagcatca |
23624147 |
T |
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| Q |
108 |
ccttcaaacttattataagataagtcaataactgtagtgttaagtcttgccaatgaaagtggaagtttcccataaagttggttatcagagagaagtaaag |
207 |
Q |
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| T |
23624148 |
ccttcaaacttattataagataagtcaataactgtagtgttaagtcttgccaatgaaagtggaagtttcccataaagttggttatcagagagaagtaaag |
23624247 |
T |
|
| Q |
208 |
atggtaaatttttcttattgaagtaaccatacgaagaagggattgaacctgtcaaactgttgttgtaaaagcgtatcatttcgagctttggcaatttgaa |
307 |
Q |
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| T |
23624248 |
atggtaaatttttcttattgaagtaaccatacgaagaagggattgaacctgtcaaactgttgttgtaaaagcgtatcatttcgagctttggcaatttgaa |
23624347 |
T |
|
| Q |
308 |
aagggaaggagggagtgaccctgagaaatggttggatgagaggtccaaattaaagaggtttttcatttgggctgggaagtcgggtattgtgcccgacatc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23624348 |
aagggaaggagggagtgaccctgagaaatggttggatgagaggtccaaattaaagaggtttttcatttgggctgggaagtcgggtattgtgcccgacatc |
23624447 |
T |
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| Q |
408 |
ccggttgagctaattgtgagggttttgagcttaagaagcttggatatgggctcaataggtattgggccggtgagatttggtaaatgatagaaaaatatag |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23624448 |
ccggttgagctaattgtgagggttttgagcttaagaagcttggatatgggctcaataggtattgggccggtgagatttggtaaatgatagaaaaatatag |
23624547 |
T |
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| Q |
508 |
actccaaataaggtaagttaccgatagaaagtggaaatttagacctaagattgttgtcgtgtgaaatagttaaatagccgacacgatttttagagcgaaa |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23624548 |
actccaaataaggtaagttaccgatagaaagtggaaatttagacctaagattgttgtcgtgtgaaatagttaaatagccgacacgatttttagagcgaaa |
23624647 |
T |
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| Q |
608 |
acaattg |
614 |
Q |
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| T |
23624648 |
acaattg |
23624654 |
T |
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