View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5572B-LTR4-TNT-insertion-5 (Length: 322)
Name: SO5572B-LTR4-TNT-insertion-5
Description: SO5572B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5572B-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 312
Target Start/End: Original strand, 32722541 - 32722845
Alignment:
| Q |
8 |
gcaacatgcacgaaaaacgctgtcgtgctctatattattttccaaggtttatagagaaaattctctcatnnnnnnnnntctataatagagaaatgcataa |
107 |
Q |
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| T |
32722541 |
gcaacatgcacgaaaaacgctgtcgtgctctatattattttccaaggtttatagagaaaattctctcataaaaaaaaatctataatagagaaatgcataa |
32722640 |
T |
|
| Q |
108 |
ataagaagtaactgaattgtattgattaaatgtgaagttacaagtgcttgtctatacaccgaaagataaattacttgttaatttatgatcaaaccaattt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32722641 |
ataagaagtaactgaattgtattgattaaatgtgaagttacaagtgcttgtctatacaccgaaagataaattacttgttaatttatgatcaaaccaattt |
32722740 |
T |
|
| Q |
208 |
ccctcgaccaatgacaggttagacgagtgctagtacgacaaaatacatgaaagtcgaatcttactcaagtctactcaggtgtacggaacggagatatacg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32722741 |
ccctcgaccaatgacaggttagacgagtgctagtacgacaaaatacatgaaagtcgaatcttactcaagtctactcaggtgtacggaacggagatatacg |
32722840 |
T |
|
| Q |
308 |
aatta |
312 |
Q |
| |
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||||| |
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|
| T |
32722841 |
aatta |
32722845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 543831 - 543873
Alignment:
| Q |
8 |
gcaacatgcacgaaaaacgctgtcgtgctctatattattttcc |
50 |
Q |
| |
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||||||||||||||||| | ||||||||||||||| ||||||| |
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| T |
543831 |
gcaacatgcacgaaaaatgttgtcgtgctctatatcattttcc |
543873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 52769021 - 52768979
Alignment:
| Q |
8 |
gcaacatgcacgaaaaacgctgtcgtgctctatattattttcc |
50 |
Q |
| |
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|||||||||||||||||| || ||||||||||||| ||||||| |
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|
| T |
52769021 |
gcaacatgcacgaaaaactctatcgtgctctatatcattttcc |
52768979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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