View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: SO5572B-LTR4-TNT-insertion-6 (Length: 822)

Name: SO5572B-LTR4-TNT-insertion-6
Description: SO5572B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] SO5572B-LTR4-TNT-insertion-6
SO5572B-LTR4-TNT-insertion-6
[»] chr5 (1 HSPs)
chr5 (8-822)||(41008526-41009339)


Alignment Details
Target: chr5 (Bit Score: 782; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 782; E-Value: 0
Query Start/End: Original strand, 8 - 822
Target Start/End: Complemental strand, 41009339 - 41008526
Alignment:
Q  8 cacagtggagtggaccgacctatttgagagctctaatcatagaagcgtgggttactaataaataaaataaacccctnnnnnnntgaatcatgtttaagca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  41009339 cacagtggagtggaccgacctatttgagagctctaatcatagaagcgtgggttactaataaataaaataaacccctaaaaaaatgaatcatgtttaagca 41009240  T
Q  108 atatataacattttgttttgtatgacaaactctaaccgagacatgcaacaatattaaaactctcacgaatagtttgtcgaccatttaaatctctaaagat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41009239 atatataacattttgttttgtatgacaaactctaaccgagacatgcaacaatattaaaactctcacgaatagtttgtcgaccatttaaatctctaaagat 41009140  T
Q  208 ttgaaagaattagtctatatagttgcgtgactcctatttaaatcaaaaacattttgtataaggtggttttggtgataaataaaaatggtagcagaagaaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41009139 ttgaaagaattagtctatatagttgcgtgactcctatttaaatcaaaaacattttgtataaggtggttttggtgataaataaaaatggtagcagaagaaa 41009040  T
Q  308 atgttccggcctagtttcacgtgaacctgcgactatcacggtgatttttgaagtatagaattgaaggagctcaaaaaggaggagggccatttactaattg 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41009039 atgttccggcctagtttcacgtgaacctgcgactatcacggtgatttttgaagtat-gaattgaaggagctcaaaaaggaggagggccatttactaattg 41008941  T
Q  408 gctgaaaatcagatgagacatgattccgaatttttggatcttaatgtaaaaatttagaggggtcatcttagttggttactacaatgttaattattacgat 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41008940 gctgaaaatcagatgagacatgattccgaatttttggatcttaatgtaaaaatttagaggggtcatcttagttggttactacaatgttaattattacgat 41008841  T
Q  508 tttattcttttttcgggagtttgatcacatcattatagtaattacttttgtcgttcatattttgaccatggtcttgtttctcatttttaatgctaaacta 607  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41008840 tttattctttttttgggagtttgatcacatcattatagtaattacttttgtcgttcatattttgaccatggtcttgtttctcatttttaatgctaaacta 41008741  T
Q  608 aactgtttccaaactcaggttaagtaatattagcagaaattaagttaatttgtttcacaatcaatgactcaagttattgtatggtgagtttgttgaatag 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41008740 aactgtttccaaactcaggttaagtaatattagcagaaattaagttaatttgtttcacaatcaatgactcaagttattgtatggtgagtttgttgaatag 41008641  T
Q  708 gatactcattttaaactagatcatttgctacctcaagagcttaatcatatgtaggcattacaattttatggactaaattaattatttactctcattggac 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41008640 gatactcattttaaactagatcatttgctacctcaagagcttaatcatatgtaggcattacaattttatggactaaattaattatttactctcattggac 41008541  T
Q  808 tatgatcattttgag 822  Q
    |||||||||||||||    
T  41008540 tatgatcattttgag 41008526  T

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