View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5572B-LTR4-TNT-insertion-7 (Length: 500)
Name: SO5572B-LTR4-TNT-insertion-7
Description: SO5572B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5572B-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr8 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 8 - 485
Target Start/End: Complemental strand, 5466276 - 5465799
Alignment:
| Q |
8 |
ttgcaaactgtacaacctgcattttgaaatataaaagtgtataagtatttatcttttattatgttgctcatgtttaaataaatttgatgccagcatctct |
107 |
Q |
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| T |
5466276 |
ttgcaaactgtacaacctgcattttgaaatataaaagtgtataagtatttatcttttattatgttgctcatgtttaaataaatttgatgccagcatctct |
5466177 |
T |
|
| Q |
108 |
tttgagtgcaagtgaattttgatccatagtccatgctgtaataaataaataactattacacgcacaaagagaggaacctgtgagattgtcaacttttcgg |
207 |
Q |
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| T |
5466176 |
tttgagtgcaagtgaattttgatccatagtccatgctgtaataaataaataactattacacgcacaaagagaggaacctgtgagattgtcaactttttgg |
5466077 |
T |
|
| Q |
208 |
attcattgcatttcacaatattatcatactgcggtttcatcttcttctgcataaaactactacaaggcgtaaacaggtccaaggcacctaattcgggacg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5466076 |
attcattgcatttcacaatattatcatactgcggtttcatcttcttctgcataaaactactacaaggcgtaaacaggtccaaggcacctaattcgggacg |
5465977 |
T |
|
| Q |
308 |
ggtatccgaaacaaaatgatccctctccaccatatcatcattcatcacacactgacccgactccaagaactggttcgggtcatcatgggacgctggtttg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5465976 |
ggtatccgaaacaaaatgatccctctccaccatatcatcattcatcacacactgacccgactccaagaactggttcgggtcatcatgggacgctggtttg |
5465877 |
T |
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| Q |
408 |
gaaaagagagttggagttgagtcattatcgtcaggtcggtttagatgagaatcagccggtgagagaatggccggggcg |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5465876 |
gaaaagagagttggagttgagtcattatcgtcaggtcggtttagatgagaatcagccggtgagagaatggccggggcg |
5465799 |
T |
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