View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5572B-LTR4-TNT-insertion-8 (Length: 292)
Name: SO5572B-LTR4-TNT-insertion-8
Description: SO5572B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5572B-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 54 - 282
Target Start/End: Complemental strand, 7732059 - 7731831
Alignment:
| Q |
54 |
ttaatgaataaaatattaacatttgttttttctcatcagaaactgagatatcttactttgctctttaattctcagaagcgataaataattttagaggagc |
153 |
Q |
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| T |
7732059 |
ttaatgaataaaatattaacatttgttttttctcatcagaaactgagatatcttactttgctctttaattctcagaagcgataaataattttagaggagc |
7731960 |
T |
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| Q |
154 |
caaatcaaatcggagaggaatgacatcagtcattcgtaggtaagagtgaatccctagtcaacttagttttagtgataacttttcattgtcatgcactaaa |
253 |
Q |
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| T |
7731959 |
caaatcaaatcggagaggaatgacatcagtcattcgtaggtaagagtgaatccctagtcaacttagttttagtgataacttttcattgtcatgcactaaa |
7731860 |
T |
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| Q |
254 |
agaatctaaaccaagggcctattcgaatt |
282 |
Q |
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| T |
7731859 |
agaatctaaaccaagggcctattcgaatt |
7731831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 421454 - 421483
Alignment:
| Q |
9 |
ttcttacattgtatcagccagtgttgaatt |
38 |
Q |
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| T |
421454 |
ttcttacattgtatcagccagtgttgaatt |
421483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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