View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: SO5574B-LTR4-TNT-insertion-10 (Length: 729)

Name: SO5574B-LTR4-TNT-insertion-10
Description: SO5574B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] SO5574B-LTR4-TNT-insertion-10
SO5574B-LTR4-TNT-insertion-10
[»] chr4 (13 HSPs)
chr4 (311-729)||(39178337-39178755)
chr4 (115-188)||(39178878-39178951)
chr4 (8-53)||(39179013-39179058)
chr4 (641-719)||(1965834-1965913)
chr4 (639-696)||(47771874-47771931)
chr4 (639-702)||(47399412-47399477)
chr4 (641-725)||(6466137-6466220)
chr4 (641-725)||(20936320-20936404)
chr4 (633-696)||(45104541-45104604)
chr4 (638-704)||(4212810-4212874)
chr4 (667-725)||(21593102-21593159)
chr4 (649-723)||(53422266-53422339)
chr4 (638-687)||(51560415-51560464)
[»] chr3 (21 HSPs)
chr3 (652-723)||(50760521-50760591)
chr3 (639-723)||(44295426-44295509)
chr3 (635-690)||(46886838-46886892)
chr3 (635-725)||(41158999-41159088)
chr3 (630-679)||(3776781-3776830)
chr3 (637-693)||(19679443-19679499)
chr3 (638-726)||(44014173-44014260)
chr3 (636-690)||(5435707-5435761)
chr3 (639-695)||(9995853-9995909)
chr3 (639-695)||(10216870-10216926)
chr3 (639-695)||(10220389-10220445)
chr3 (635-687)||(37138236-37138288)
chr3 (665-728)||(2128339-2128401)
chr3 (639-725)||(36587870-36587956)
chr3 (636-694)||(25699293-25699351)
chr3 (639-708)||(5430920-5430988)
chr3 (691-728)||(15304435-15304472)
chr3 (672-729)||(31364828-31364884)
chr3 (690-727)||(33883838-33883875)
chr3 (631-688)||(36887393-36887450)
chr3 (639-708)||(48528472-48528540)
[»] chr5 (21 HSPs)
chr5 (641-725)||(18857491-18857574)
chr5 (636-695)||(3255749-3255808)
chr5 (633-677)||(7907752-7907796)
chr5 (639-728)||(6725116-6725205)
chr5 (644-725)||(11054085-11054165)
chr5 (639-696)||(38104998-38105055)
chr5 (639-679)||(6593178-6593218)
chr5 (639-695)||(20982270-20982326)
chr5 (639-695)||(26796341-26796397)
chr5 (639-695)||(26799859-26799915)
chr5 (639-695)||(26807409-26807465)
chr5 (638-690)||(34590369-34590421)
chr5 (641-685)||(40731174-40731218)
chr5 (635-726)||(10125809-10125899)
chr5 (639-690)||(30585567-30585618)
chr5 (639-694)||(40731350-40731405)
chr5 (633-719)||(9106713-9106798)
chr5 (667-704)||(7097369-7097406)
chr5 (641-690)||(10772019-10772068)
chr5 (642-695)||(26516180-26516233)
chr5 (634-707)||(42849853-42849925)
[»] chr7 (13 HSPs)
chr7 (638-721)||(41668205-41668287)
chr7 (638-721)||(41668883-41668965)
chr7 (640-696)||(48131228-48131284)
chr7 (638-705)||(32156886-32156954)
chr7 (641-728)||(21853204-21853290)
chr7 (641-695)||(46945775-46945829)
chr7 (639-687)||(425965-426013)
chr7 (651-707)||(7644391-7644446)
chr7 (639-725)||(12110254-12110339)
chr7 (690-728)||(43152990-43153028)
chr7 (633-690)||(7612331-7612388)
chr7 (690-723)||(35007548-35007581)
chr7 (639-680)||(35331022-35331063)
[»] chr8 (18 HSPs)
chr8 (632-725)||(34522147-34522239)
chr8 (634-692)||(4389817-4389875)
chr8 (635-728)||(44426489-44426583)
chr8 (641-690)||(2840239-2840288)
chr8 (641-690)||(2844926-2844975)
chr8 (638-726)||(16163368-16163455)
chr8 (639-681)||(31751706-31751748)
chr8 (641-690)||(2833471-2833520)
chr8 (631-680)||(42215454-42215503)
chr8 (657-725)||(926399-926466)
chr8 (641-689)||(8499087-8499135)
chr8 (639-691)||(22790509-22790560)
chr8 (641-724)||(6950217-6950300)
chr8 (640-687)||(10383710-10383757)
chr8 (648-707)||(14929225-14929283)
chr8 (648-725)||(25866988-25867065)
chr8 (690-728)||(26215440-26215478)
chr8 (641-728)||(32976310-32976399)
[»] chr2 (19 HSPs)
chr2 (640-697)||(30167579-30167636)
chr2 (642-725)||(4090246-4090328)
chr2 (643-694)||(41406955-41407006)
chr2 (640-728)||(4026711-4026799)
chr2 (634-723)||(41817057-41817145)
chr2 (637-690)||(41880643-41880696)
chr2 (637-673)||(12140442-12140478)
chr2 (640-680)||(12313323-12313363)
chr2 (691-725)||(787276-787310)
chr2 (639-697)||(6167416-6167474)
chr2 (675-725)||(17952792-17952841)
chr2 (639-725)||(28039423-28039508)
chr2 (675-725)||(31461368-31461417)
chr2 (675-725)||(33197330-33197379)
chr2 (640-690)||(36534668-36534717)
chr2 (694-728)||(41407023-41407057)
chr2 (691-725)||(43259779-43259813)
chr2 (639-688)||(626353-626402)
chr2 (641-690)||(2416194-2416242)
[»] chr1 (17 HSPs)
chr1 (640-728)||(34619466-34619553)
chr1 (639-721)||(33527242-33527323)
chr1 (644-725)||(10199499-10199579)
chr1 (640-687)||(10280521-10280568)
chr1 (641-690)||(51688576-51688624)
chr1 (638-693)||(1729752-1729807)
chr1 (639-690)||(27820481-27820531)
chr1 (631-662)||(51190718-51190749)
chr1 (641-687)||(4920894-4920940)
chr1 (636-690)||(5894304-5894357)
chr1 (684-725)||(36495309-36495351)
chr1 (675-725)||(46499945-46499994)
chr1 (640-690)||(47498984-47499033)
chr1 (690-723)||(172285-172318)
chr1 (639-728)||(36070144-36070232)
chr1 (641-690)||(48064189-48064238)
chr1 (643-728)||(52286576-52286660)
[»] chr6 (12 HSPs)
chr6 (641-696)||(33826866-33826921)
chr6 (634-690)||(24626159-24626214)
chr6 (639-682)||(31776414-31776457)
chr6 (675-725)||(4248888-4248937)
chr6 (634-728)||(11340713-11340805)
chr6 (640-674)||(26550370-26550404)
chr6 (379-417)||(29219902-29219940)
chr6 (641-694)||(3155057-3155110)
chr6 (639-680)||(7946024-7946065)
chr6 (372-417)||(25107099-25107144)
chr6 (641-690)||(28619111-28619160)
chr6 (643-696)||(33890664-33890717)
[»] scaffold0590 (1 HSPs)
scaffold0590 (675-725)||(1165-1214)
[»] scaffold0549 (2 HSPs)
scaffold0549 (634-728)||(1812-1904)
scaffold0549 (634-728)||(3902-3994)
[»] scaffold0275 (1 HSPs)
scaffold0275 (675-725)||(2761-2810)


Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 311 - 729
Target Start/End: Complemental strand, 39178755 - 39178337
Alignment:
Q  311 cttacttgtgtctggggtagggttggggggacacctatgaaatactgtcgaaaacgacactgacactgataataatttgagagaatggaagtggttgaat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39178755 cttacttgtgtctggggtagggttggggggacacctatgaaatactgccgaagacgacactgacactgataataatttgagagaatggaagtggttgaat 39178656  T
Q  411 gtaaccatacatgtgtggtgtcagacacctgatacatcttcgatctgaagtgtctcttctatttagggatacggatacctctttttgtttcatgtgtgtt 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39178655 gtaaccatacatgtgtggtgtcagacacctgatacatcttcgatctgaagtgtctcttctatttagggatacggatacctctttttgtttcatgtgtgtt 39178556  T
Q  511 tgcacaagtacatgtacttgtgcaaaaatattgcttgcagtaatttgctttataagttagttggctgaacataatgtattgcatgcatccatggatgaga 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39178555 tgcacaagtacatgtacttgtgcaaaaatattgcttgcagtaatttgctttataagttagttggctgaacataatgtattgcatgcatccatggatgaga 39178456  T
Q  611 agataagagtttaccatccaaataaggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactc 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39178455 agataagagtttaccatccaaataaggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactc 39178356  T
Q  711 aagataaaataaagttaag 729  Q
    |||||||||||||||||||    
T  39178355 aagataaaataaagttaag 39178337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 39178951 - 39178878
Alignment:
Q  115 cgaagccggagacagcagctgatggttctgtgaatttgatgatttggcattgtactattcctggaaaagctggg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39178951 cgaagccggagacagcagctgatggttctgtgaatttgatgatttggcattgtactattcctggaaaagctggg 39178878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 39179058 - 39179013
Alignment:
Q  8 ggaagaatcatcctcatgtgagtacaatcactgtttctgctatttc 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  39179058 ggaagaatcatcctcatgtgagtacaatcactgtttctgctatttc 39179013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 641 - 719
Target Start/End: Original strand, 1965834 - 1965913
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatag--tataagtgcttatcatataagctatttctataactcaagataaaa 719  Q
    |||||||||||||||||||||| |||||||||||  ||||||||||||| | |||| ||||||||||| | ||||| ||||    
T  1965834 tgtttggataaacaacttatttgacagcttatagcatataagtgcttatga-ataaactatttctatagcacaagagaaaa 1965913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 639 - 696
Target Start/End: Original strand, 47771874 - 47771931
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagc 696  Q
    |||||||||||||||| ||||||||  ||||||||| ||||| |||||||||||||||    
T  47771874 cctgtttggataaacagcttattttggagcttatagcataagcgcttatcatataagc 47771931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 639 - 702
Target Start/End: Original strand, 47399412 - 47399477
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatc--atataagctatttc 702  Q
    ||||||||||||||||||||| ||| |||||||||| ||||| | |||||  ||||||||||||||    
T  47399412 cctgtttggataaacaacttagtttgcagcttataggataagcgtttatcgaatataagctatttc 47399477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 641 - 725
Target Start/End: Complemental strand, 6466220 - 6466137
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagt 725  Q
    |||||||||||||||||| |||| ||||||||||  |||| |||||| | ||||| | ||| |||||| |||||| |||||||||    
T  6466220 tgtttggataaacaacttcttttgcagcttatagcgtaagcgcttatga-ataagttgtttatataacacaagatcaaataaagt 6466137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 641 - 725
Target Start/End: Complemental strand, 20936404 - 20936320
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagt 725  Q
    |||||||||||| | |||| ||| ||||||||||||||||  |||||  | |||||||| |||||||| |||| |||||| ||||    
T  20936404 tgtttggataaagagcttaatttgcagcttatagtataagcacttatgttttaagctatatctataacgcaaggtaaaatgaagt 20936320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 696
Target Start/End: Complemental strand, 45104604 - 45104541
Alignment:
Q  633 taaggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagc 696  Q
    ||||||||||||||||||||| | ||||||| |||||||||| | ||| | ||| |||||||||    
T  45104604 taaggtcctgtttggataaactaattattttgcagcttatagcacaagagtttaacatataagc 45104541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 638 - 704
Target Start/End: Original strand, 4212810 - 4212874
Alignment:
Q  638 tcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttcta 704  Q
    |||||||||||||||||||||||||| |||||||||| | ||| | ||||  |||||||||||||||    
T  4212810 tcctgtttggataaacaacttatttt-cagcttatagcacaagcgattat-gtataagctatttcta 4212874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 667 - 725
Target Start/End: Complemental strand, 21593159 - 21593102
Alignment:
Q  667 gcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagt 725  Q
    ||||||||  |||||||||||  ||||| |||||||||||||| |||||||||||||||    
T  21593159 gcttatagcgtaagtgcttatg-tataaactatttctataactaaagataaaataaagt 21593102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 649 - 723
Target Start/End: Original strand, 53422266 - 53422339
Alignment:
Q  649 taaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaa 723  Q
    |||| |||| ||||| |||||||||| |||||  ||||| | |||||||||||||| ||| ||||||||||||||    
T  53422266 taaagaactaattttgcagcttatagcataagctcttatga-ataagctatttctacaacacaagataaaataaa 53422339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 687
Target Start/End: Complemental strand, 51560464 - 51560415
Alignment:
Q  638 tcctgtttggataaacaacttattttacagcttatagtataagtgcttat 687  Q
    |||| ||||||||||||||||| |||||||||||| | ||||| ||||||    
T  51560464 tcctatttggataaacaacttaatttacagcttattgcataagcgcttat 51560415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 652 - 723
Target Start/End: Original strand, 50760521 - 50760591
Alignment:
Q  652 acaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaa 723  Q
    |||||||||||| |||||| |||||||||||||||| | ||||||||||||||| |||||||||||||||||    
T  50760521 acaacttattttgcagcttgtagtataagtgcttatga-ataagctatttctatgactcaagataaaataaa 50760591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 723
Target Start/End: Original strand, 44295426 - 44295509
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaa 723  Q
    ||||||| |||  ||| |||||||| |||||| ||||||||| |||| | | |||||||||||||||||||||||||||||||||    
T  44295426 cctgttttgattgacatcttattttgcagcttgtagtataagcgcttgtga-ataagctatttctataactcaagataaaataaa 44295509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 635 - 690
Target Start/End: Complemental strand, 46886892 - 46886838
Alignment:
Q  635 aggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcat 690  Q
    ||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||    
T  46886892 aggtcctgtttggataaacaactta-tttgcagcttatagcataagtgcttatcat 46886838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 635 - 725
Target Start/End: Original strand, 41158999 - 41159088
Alignment:
Q  635 aggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagt 725  Q
    |||| |||||||||||| ||||||| || |  |||||| ||||||||||||||  |||||| |||| |||||||| |||||||||||||||    
T  41158999 aggtactgtttggataaccaacttaattaaacgcttatcgtataagtgcttat-gtataagttattcctataactaaagataaaataaagt 41159088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 630 - 679
Target Start/End: Complemental strand, 3776830 - 3776781
Alignment:
Q  630 aaataaggtcctgtttggataaacaacttattttacagcttatagtataa 679  Q
    ||||| |||||||||||||||||||||||| ||||| |||||||||||||    
T  3776830 aaatagggtcctgtttggataaacaacttaatttactgcttatagtataa 3776781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 637 - 693
Target Start/End: Complemental strand, 19679499 - 19679443
Alignment:
Q  637 gtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatata 693  Q
    |||||| |||||||||||||||| ||| |||||||||||||||| || |||||||||    
T  19679499 gtcctggttggataaacaacttaatttgcagcttatagtataagggcctatcatata 19679443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 726
Target Start/End: Original strand, 44014173 - 44014260
Alignment:
Q  638 tcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagtt 726  Q
    |||||||||||||||  ||||||||| |||| ||||| ||||   |||||  |||||||||||||||||||| ||||||||| ||||||    
T  44014173 tcctgtttggataaatgacttattttgcagcctatagcataaccacttatg-tataagctatttctataactaaagataaaacaaagtt 44014260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 690
Target Start/End: Original strand, 5435707 - 5435761
Alignment:
Q  636 ggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcat 690  Q
    |||| ||||||||||  ||||||| |||||||||||||| |||||||||||||||    
T  5435707 ggtcatgtttggataggcaacttaatttacagcttatagcataagtgcttatcat 5435761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 639 - 695
Target Start/End: Original strand, 9995853 - 9995909
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataag 695  Q
    ||||||||||||||||||||||||| || ||||| | ||||| ||||| ||||||||    
T  9995853 cctgtttggataaacaacttattttgcaccttatcgcataagcgcttaccatataag 9995909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 639 - 695
Target Start/End: Original strand, 10216870 - 10216926
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataag 695  Q
    ||||||||||||||||||||||||| || ||||| | ||||| ||||| ||||||||    
T  10216870 cctgtttggataaacaacttattttgcaccttatcgcataagcgcttaccatataag 10216926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 639 - 695
Target Start/End: Original strand, 10220389 - 10220445
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataag 695  Q
    ||||||||||||||||||||||||| || ||||| | ||||| ||||| ||||||||    
T  10220389 cctgtttggataaacaacttattttgcaccttatcgcataagcgcttaccatataag 10220445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 635 - 687
Target Start/End: Original strand, 37138236 - 37138288
Alignment:
Q  635 aggtcctgtttggataaacaacttattttacagcttatagtataagtgcttat 687  Q
    |||| |||||||||||||||||||| |||  ||||||||| ||||||||||||    
T  37138236 aggtactgtttggataaacaacttaatttgaagcttatagcataagtgcttat 37138288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 665 - 728
Target Start/End: Complemental strand, 2128401 - 2128339
Alignment:
Q  665 cagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagttaa 728  Q
    |||||||||| ||||| | ||||  |||||||||||||||||||  ||||||||||||||||||    
T  2128401 cagcttatagcataagcgtttatg-tataagctatttctataacaaaagataaaataaagttaa 2128339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 725
Target Start/End: Original strand, 36587870 - 36587956
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagc-tatttctataactcaagataaaataaagt 725  Q
    ||||||| ||||||||| ||| |||||||||||||| ||||| |||||| | |||||| |||| ||||||| ||||||| ||| ||||    
T  36587870 cctgtttcgataaacaatttaatttacagcttatagcataagcgcttatga-ataagcttattactataacacaagatagaattaagt 36587956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 636 - 694
Target Start/End: Complemental strand, 25699351 - 25699293
Alignment:
Q  636 ggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataa 694  Q
    |||| ||||||| ||||||||| | || || |||||||| |||||||||||||||||||    
T  25699351 ggtcttgtttggttaaacaactcaattaaccgcttatagcataagtgcttatcatataa 25699293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 708
Target Start/End: Original strand, 5430920 - 5430988
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataac 708  Q
    ||||||||||||| ||||||| || | ||||||||  ||||||||||||  ||||||| |||||||||||    
T  5430920 cctgtttggataagcaacttaattaagagcttatatcataagtgcttat-gtataagccatttctataac 5430988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 728
Target Start/End: Complemental strand, 15304472 - 15304435
Alignment:
Q  691 ataagctatttctataactcaagataaaataaagttaa 728  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  15304472 ataagctatttctataacaaaagataaaataaagttaa 15304435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 729
Target Start/End: Original strand, 31364828 - 31364884
Alignment:
Q  672 tagtataagtgcttatcatataagctatttctataactcaagataaaataaagttaag 729  Q
    ||||||||||||| || ||||||||||||| ||||||  ||| |||||||||||||||    
T  31364828 tagtataagtgctaat-atataagctatttttataacaaaaggtaaaataaagttaag 31364884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 727
Target Start/End: Complemental strand, 33883875 - 33883838
Alignment:
Q  690 tataagctatttctataactcaagataaaataaagtta 727  Q
    |||||||||||||||||||  |||||||||||||||||    
T  33883875 tataagctatttctataacataagataaaataaagtta 33883838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 688
Target Start/End: Original strand, 36887393 - 36887450
Alignment:
Q  631 aataaggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatc 688  Q
    ||||||| | |||||||||||||| |||| |||  ||||||||| |||||||||||||    
T  36887393 aataaggccatgtttggataaacatcttaatttgtagcttataggataagtgcttatc 36887450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 708
Target Start/End: Original strand, 48528472 - 48528540
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataac 708  Q
    ||||||||||||||||||| | || | |||||||  ||||||| |||||  |||||||||||||||||||    
T  48528472 cctgtttggataaacaactgaattaagagcttatcatataagtacttat-gtataagctatttctataac 48528540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 641 - 725
Target Start/End: Complemental strand, 18857574 - 18857491
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagt 725  Q
    ||||||||||||||||||||||| |||||| |||| |||||| |||| | |||||||||||| ||||| || |||||||||||||    
T  18857574 tgtttggataaacaacttattttgcagcttgtagtgtaagtgtttatga-ataagctatttcaataacacacgataaaataaagt 18857491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 636 - 695
Target Start/End: Complemental strand, 3255808 - 3255749
Alignment:
Q  636 ggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataag 695  Q
    ||||||||||||||||||||||||||||  || |||||| |||| |||||||||||||||    
T  3255808 ggtcctgtttggataaacaacttattttgaagtttatagcataaatgcttatcatataag 3255749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 677
Target Start/End: Original strand, 7907752 - 7907796
Alignment:
Q  633 taaggtcctgtttggataaacaacttattttacagcttatagtat 677  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||    
T  7907752 taaggccctgtttggataaacaacttattttacaacttatagtat 7907796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 639 - 728
Target Start/End: Original strand, 6725116 - 6725205
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagttaa 728  Q
    |||||||||||||| || ||| || |  |||||||| ||||||||||||||||||||  |||| |||||   ||||||||| ||||||||    
T  6725116 cctgtttggataaataatttaattaagtgcttatagcataagtgcttatcatataagtcatttttataataaaagataaaacaaagttaa 6725205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 644 - 725
Target Start/End: Original strand, 11054085 - 11054165
Alignment:
Q  644 ttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagt 725  Q
    |||||||||||||||| ||| | |||||||| ||||  ||||||  ||||||||||||||||||   |||||||||||||||    
T  11054085 ttggataaacaacttaatttccggcttatagcataaacgcttatg-tataagctatttctataataaaagataaaataaagt 11054165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 639 - 696
Target Start/End: Complemental strand, 38105055 - 38104998
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagc 696  Q
    ||||||||||||||||||||||||| ||||||||||  |||| | |||| ||||||||    
T  38105055 cctgtttggataaacaacttattttgcagcttatagcgtaagcgtttatgatataagc 38104998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 639 - 679
Target Start/End: Original strand, 6593178 - 6593218
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataa 679  Q
    ||||||||||||||||||||| |||||||||||||| ||||    
T  6593178 cctgtttggataaacaacttaatttacagcttatagcataa 6593218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 639 - 695
Target Start/End: Complemental strand, 20982326 - 20982270
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataag 695  Q
    ||||||||||||||||||||  || |  |||||||| ||||||||||||||||||||    
T  20982326 cctgtttggataaacaacttcattaagtgcttatagcataagtgcttatcatataag 20982270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 639 - 695
Target Start/End: Original strand, 26796341 - 26796397
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataag 695  Q
    ||||||||||||||||||||||||| || ||||| | ||||| ||||| ||||||||    
T  26796341 cctgtttggataaacaacttattttgcaccttatcgcataagcgcttaccatataag 26796397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 639 - 695
Target Start/End: Original strand, 26799859 - 26799915
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataag 695  Q
    ||||||||||||||||||||||||| || ||||| | ||||| ||||| ||||||||    
T  26799859 cctgtttggataaacaacttattttgcaccttatcgcataagcgcttaccatataag 26799915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 639 - 695
Target Start/End: Original strand, 26807409 - 26807465
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataag 695  Q
    ||||||||||||||||||||||||| || ||||| | ||||| ||||| ||||||||    
T  26807409 cctgtttggataaacaacttattttgcaccttatcgcataagcgcttaccatataag 26807465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 638 - 690
Target Start/End: Complemental strand, 34590421 - 34590369
Alignment:
Q  638 tcctgtttggataaacaacttattttacagcttatagtataagtgcttatcat 690  Q
    |||||||||||||||| ||||||||| |||||||||| ||||||  |||||||    
T  34590421 tcctgtttggataaacgacttattttgcagcttataggataagtatttatcat 34590369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 641 - 685
Target Start/End: Original strand, 40731174 - 40731218
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatagtataagtgctt 685  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||||    
T  40731174 tgtttggataaacaaattattttgcagcttatagcataagtgctt 40731218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 726
Target Start/End: Complemental strand, 10125899 - 10125809
Alignment:
Q  635 aggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagtt 726  Q
    ||||| |||||||||||||| ||||| || ||  |||||| |||| || |||| | |||||||||||||||| | |||||||| ||||||||    
T  10125899 aggtcatgtttggataaacagcttatattgcaagttatagcataactgattatga-ataagctatttctatatcacaagataagataaagtt 10125809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 690
Target Start/End: Complemental strand, 30585618 - 30585567
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcat 690  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| |||||||    
T  30585618 cctgtttggataaacaacttaatttgcaaattatagtataagtgtttatcat 30585567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 694
Target Start/End: Original strand, 40731350 - 40731405
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataa 694  Q
    |||||||||||||| |||||||  |  ||||||||||||||| |||||||||||||    
T  40731350 cctgtttggataaataacttatggtgtagcttatagtataagcgcttatcatataa 40731405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 719
Target Start/End: Original strand, 9106713 - 9106798
Alignment:
Q  633 taaggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaa 719  Q
    ||||| ||||||||  ||||||||||||||| ||||||| || |||||   |||| | |||||| ||||||||||| ||||||||||    
T  9106713 taaggccctgtttgtgtaaacaacttattttgcagcttaaagcataagcatttatga-ataagcaatttctataacccaagataaaa 9106798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 704
Target Start/End: Original strand, 7097369 - 7097406
Alignment:
Q  667 gcttatagtataagtgcttatcatataagctatttcta 704  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  7097369 gcttatagcataaatgcttatcatataagctatttcta 7097406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 690
Target Start/End: Complemental strand, 10772068 - 10772019
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatagtataagtgcttatcat 690  Q
    |||||| ||| |||||||| ||| |||||||||| |||||||||||||||    
T  10772068 tgtttgaatatacaacttaatttgcagcttatagcataagtgcttatcat 10772019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 695
Target Start/End: Original strand, 26516180 - 26516233
Alignment:
Q  642 gtttggataaacaacttattttacagcttatagtataagtgcttatcatataag 695  Q
    |||||||||||||||||| || |  |||||||| ||||| ||||||||||||||    
T  26516180 gtttggataaacaacttaattaagcgcttatagcataagcgcttatcatataag 26516233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 707
Target Start/End: Original strand, 42849853 - 42849925
Alignment:
Q  634 aaggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataa 707  Q
    |||| ||||||||||||| |   ||||||| |||||||| | ||||||||||||  ||||||||||||||||||    
T  42849853 aaggccctgtttggataagccgtttattttgcagcttatggcataagtgcttat-gtataagctatttctataa 42849925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 638 - 721
Target Start/End: Complemental strand, 41668287 - 41668205
Alignment:
Q  638 tcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaata 721  Q
    ||||||||||||||||| |||||||| ||||  |||| ||||| |||||| | |||||||||||||||||| ||||||||||||    
T  41668287 tcctgtttggataaacagcttattttgcagccgatagcataagcgcttatga-ataagctatttctataacccaagataaaata 41668205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 638 - 721
Target Start/End: Complemental strand, 41668965 - 41668883
Alignment:
Q  638 tcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaata 721  Q
    ||||||||||||||||| |||||||| ||||  |||| ||||| |||||| | |||||||||||||||||| ||||||||||||    
T  41668965 tcctgtttggataaacagcttattttgcagccgatagcataagcgcttatga-ataagctatttctataacccaagataaaata 41668883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 640 - 696
Target Start/End: Original strand, 48131228 - 48131284
Alignment:
Q  640 ctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagc 696  Q
    ||||||||||| |||||||||||| ||||||| || |||||||||||||||||||||    
T  48131228 ctgtttggatacacaacttattttgcagcttacagcataagtgcttatcatataagc 48131284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 705
Target Start/End: Original strand, 32156886 - 32156954
Alignment:
Q  638 tcctgtttggataaacaacttattttacagcttatagtataagtgcttatca-tataagctatttctat 705  Q
    |||| ||||||||||||||||| ||| |||||||||| ||||  |||||||| ||||||||||||||||    
T  32156886 tcctatttggataaacaacttaatttgcagcttatagcataaacgcttatcagtataagctatttctat 32156954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 641 - 728
Target Start/End: Complemental strand, 21853290 - 21853204
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagttaa 728  Q
    |||||||||||||| |||| || | |  |||||||||||||| |||| ||||||| ||||||||| ||  ||||||||||||||||||    
T  21853290 tgtttggataaacagcttaattaataatttatagtataagtgattat-atataagttatttctattacaaaagataaaataaagttaa 21853204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 641 - 695
Target Start/End: Original strand, 46945775 - 46945829
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatagtataagtgcttatcatataag 695  Q
    ||||||||||||||||||| ||| ||||||||||  |||| ||||||||||||||    
T  46945775 tgtttggataaacaacttagtttgcagcttatagcttaagcgcttatcatataag 46945829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 639 - 687
Target Start/End: Complemental strand, 426013 - 425965
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttat 687  Q
    |||||||||||||| |||||||||| |||||||||| ||||| ||||||    
T  426013 cctgtttggataaataacttattttgcagcttatagcataagcgcttat 425965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 651 - 707
Target Start/End: Complemental strand, 7644446 - 7644391
Alignment:
Q  651 aacaacttattttacagcttatagtataagtgcttatcatataagctatttctataa 707  Q
    ||||||||||||| | |||||||| |||||||||||| | |||||||||||||||||    
T  7644446 aacaacttatttttcggcttatagcataagtgcttatga-ataagctatttctataa 7644391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 639 - 725
Target Start/End: Original strand, 12110254 - 12110339
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagt 725  Q
    ||||||| |||||||| |||| ||| || ||||||| |||||  ||||| | |||| |||||||||| || ||||||||||||||||    
T  12110254 cctgtttcgataaacagcttaatttgcaacttatagcataagcacttatga-ataacctatttctattacacaagataaaataaagt 12110339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 690 - 728
Target Start/End: Complemental strand, 43153028 - 43152990
Alignment:
Q  690 tataagctatttctataactcaagataaaataaagttaa 728  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  43153028 tataagctatttctataacaaaagataaaataaagttaa 43152990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 690
Target Start/End: Original strand, 7612331 - 7612388
Alignment:
Q  633 taaggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcat 690  Q
    |||||||||||||  |||||||||||| ||| |||||||||| |||||  ||||||||    
T  7612331 taaggtcctgtttcaataaacaacttaatttgcagcttatagcataagcacttatcat 7612388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 723
Target Start/End: Original strand, 35007548 - 35007581
Alignment:
Q  690 tataagctatttctataactcaagataaaataaa 723  Q
    |||||||||||||||||||| |||||||||||||    
T  35007548 tataagctatttctataactaaagataaaataaa 35007581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 680
Target Start/End: Original strand, 35331022 - 35331063
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataag 680  Q
    |||||||||| |||||||||| |||||||||||||| |||||    
T  35331022 cctgtttggaaaaacaacttaatttacagcttatagcataag 35331063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 632 - 725
Target Start/End: Complemental strand, 34522239 - 34522147
Alignment:
Q  632 ataaggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagt 725  Q
    |||||| | |||||||||||| |||||||||| || |||| || ||||| |||||| | ||||||||||||||| || ||||||||||||||||    
T  34522239 ataaggccatgtttggataaaaaacttattttgcaacttacagcataagcgcttatga-ataagctatttctatgacacaagataaaataaagt 34522147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 634 - 692
Target Start/End: Original strand, 4389817 - 4389875
Alignment:
Q  634 aaggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatat 692  Q
    |||| |||||||||||||| |||||||||| |||||||||| | |||||||||||||||    
T  4389817 aaggccctgtttggataaataacttattttgcagcttatagcagaagtgcttatcatat 4389875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 635 - 728
Target Start/End: Complemental strand, 44426583 - 44426489
Alignment:
Q  635 aggtcctgtttggataaacaacttattttacagcttatagtataagtgcttat-catataagctatttctataactcaagataaaataaagttaa 728  Q
    ||||| ||||||| ||||||||||| ||| |||||||||| ||||||||||||  | ||||||| ||||||| ||  |||| |||||||||||||    
T  44426583 aggtcatgtttgggtaaacaacttaatttgcagcttatagcataagtgcttatgaaaataagctgtttctattacaaaagacaaaataaagttaa 44426489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 641 - 690
Target Start/End: Original strand, 2840239 - 2840288
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatagtataagtgcttatcat 690  Q
    |||||| |||||||||||||||| |||||||||| |||||||||||||||    
T  2840239 tgtttgtataaacaacttattttgcagcttatagcataagtgcttatcat 2840288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 641 - 690
Target Start/End: Original strand, 2844926 - 2844975
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatagtataagtgcttatcat 690  Q
    |||||| |||||||||||||||| |||||||||| |||||||||||||||    
T  2844926 tgtttgtataaacaacttattttgcagcttatagcataagtgcttatcat 2844975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 726
Target Start/End: Complemental strand, 16163455 - 16163368
Alignment:
Q  638 tcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagtt 726  Q
    |||||||||||||||  ||||||||| |||| ||||| ||||   |||||  |||||||||||||||||||| ||||||||| ||||||    
T  16163455 tcctgtttggataaatgacttattttgcagcctatagcataaccacttatg-tataagctatttctataactaaagataaaacaaagtt 16163368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 639 - 681
Target Start/End: Complemental strand, 31751748 - 31751706
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagt 681  Q
    ||||||||||||||||||||| ||| |||||||||||||||||    
T  31751748 cctgtttggataaacaacttaatttgcagcttatagtataagt 31751706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 641 - 690
Target Start/End: Complemental strand, 2833520 - 2833471
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatagtataagtgcttatcat 690  Q
    |||||||||||||  |||||||| |||||||||| |||||||||||||||    
T  2833520 tgtttggataaactgcttattttgcagcttatagcataagtgcttatcat 2833471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 680
Target Start/End: Complemental strand, 42215503 - 42215454
Alignment:
Q  631 aataaggtcctgtttggataaacaacttattttacagcttatagtataag 680  Q
    |||||||  ||||||||||||||| ||||||||||||||||||| |||||    
T  42215503 aataaggatctgtttggataaacagcttattttacagcttatagaataag 42215454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 657 - 725
Target Start/End: Original strand, 926399 - 926466
Alignment:
Q  657 ttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagt 725  Q
    ||||||| ||||| |||| ||||| || ||| | |||||||||||||||||| ||||||||||||||||    
T  926399 ttattttgcagctaatagcataagcgcatatga-ataagctatttctataacacaagataaaataaagt 926466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 641 - 689
Target Start/End: Original strand, 8499087 - 8499135
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatagtataagtgcttatca 689  Q
    ||||||||||||||||||| ||| || ||||||||||||| ||||||||    
T  8499087 tgtttggataaacaacttaatttgcaacttatagtataagcgcttatca 8499135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 639 - 691
Target Start/End: Original strand, 22790509 - 22790560
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcata 691  Q
    ||||||||||||||||||||| ||||||||||||||| ||||  |||||||||    
T  22790509 cctgtttggataaacaactta-tttacagcttatagtgtaagcacttatcata 22790560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 641 - 724
Target Start/End: Original strand, 6950217 - 6950300
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaag 724  Q
    ||||| ||||||||||||| || |  |||||||| ||||  |||||||||||||||| ||| ||||||  |||||||| |||||    
T  6950217 tgtttagataaacaacttaattaagtgcttatagcataaacgcttatcatataagctgtttttataacaaaagataaagtaaag 6950300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 687
Target Start/End: Original strand, 10383710 - 10383757
Alignment:
Q  640 ctgtttggataaacaacttattttacagcttatagtataagtgcttat 687  Q
    |||||||||||||||| ||||||| ||||||||||||| | |||||||    
T  10383710 ctgtttggataaacaatttattttgcagcttatagtatgaatgcttat 10383757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 707
Target Start/End: Complemental strand, 14929283 - 14929225
Alignment:
Q  648 ataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataa 707  Q
    ||||||||||||  | ||||||||||||||||||||||| |  |||||||||||||||||    
T  14929283 ataaacaacttacgtaacagcttatagtataagtgctta-cgcataagctatttctataa 14929225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 648 - 725
Target Start/End: Original strand, 25866988 - 25867065
Alignment:
Q  648 ataaacaacttattttacagcttatagtataagtgcttatcatat-aagctatttctataactcaagataaaataaagt 725  Q
    ||||| ||||||||| | ||||||||| ||||||||||| ||| | ||||||||||||||||  ||||| |||||||||    
T  25866988 ataaataacttatttaaaagcttatagcataagtgctta-catctaaagctatttctataacaaaagatgaaataaagt 25867065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 690 - 728
Target Start/End: Original strand, 26215440 - 26215478
Alignment:
Q  690 tataagctatttctataactcaagataaaataaagttaa 728  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  26215440 tataagctatttctataacaaaagataaaataaagttaa 26215478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 641 - 728
Target Start/End: Original strand, 32976310 - 32976399
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatagtataagtgcttatcat--ataagctatttctataactcaagataaaataaagttaa 728  Q
    |||||||||||||| |||| | | |||||||||| || || | || ||||  ||| ||||||||||||||  ||||||||||||||||||    
T  32976310 tgtttggataaacaccttaatatgcagcttatagcattagagtttttcatgtatacgctatttctataacaaaagataaaataaagttaa 32976399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 640 - 697
Target Start/End: Original strand, 30167579 - 30167636
Alignment:
Q  640 ctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagct 697  Q
    |||||||||| |||||||||||||||  ||||||| ||||||||||||||||||||||    
T  30167579 ctgtttggatgaacaacttattttactccttatagcataagtgcttatcatataagct 30167636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 642 - 725
Target Start/End: Original strand, 4090246 - 4090328
Alignment:
Q  642 gtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagt 725  Q
    ||||||||||||||||||||||  |||||| || ||||| |  ||| | |||||||||||| ||||| ||||||||||||||||    
T  4090246 gtttggataaacaacttattttgaagcttaaagcataagggtgtatga-ataagctatttccataacacaagataaaataaagt 4090328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 643 - 694
Target Start/End: Original strand, 41406955 - 41407006
Alignment:
Q  643 tttggataaacaacttattttacagcttatagtataagtgcttatcatataa 694  Q
    |||||||||||||||||||||  ||||||| | |||||||||||||||||||    
T  41406955 tttggataaacaacttattttgtagcttatggcataagtgcttatcatataa 41407006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 640 - 728
Target Start/End: Original strand, 4026711 - 4026799
Alignment:
Q  640 ctgtttggataaacaacttattttacagcttatagt-ataagtgcttatcatataagctatttctataactcaagataaaataaagttaa 728  Q
    |||||||||||||||  ||| ||| ||||||||  | ||||||||||||| |||||||||||| |||| |  ||||||||||||||||||    
T  4026711 ctgtttggataaacagtttaatttgcagcttatcatgataagtgcttatc-tataagctatttttatagcaaaagataaaataaagttaa 4026799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 634 - 723
Target Start/End: Original strand, 41817057 - 41817145
Alignment:
Q  634 aaggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaa 723  Q
    |||||||| || |||||||||||||||||| |  ||||||  |||| ||||||| | |||||||||||||||||| ||||| ||| ||||    
T  41817057 aaggtcctattaggataaacaacttattttgccacttataacataaatgcttatga-ataagctatttctataacacaagagaaattaaa 41817145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 637 - 690
Target Start/End: Complemental strand, 41880696 - 41880643
Alignment:
Q  637 gtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcat 690  Q
    ||||||||||||||||||||||| ||| |||||||||| | ||| |||||||||    
T  41880696 gtcctgtttggataaacaacttactttgcagcttatagcacaagcgcttatcat 41880643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 637 - 673
Target Start/End: Original strand, 12140442 - 12140478
Alignment:
Q  637 gtcctgtttggataaacaacttattttacagcttata 673  Q
    ||||||||||||||||||||||||||| |||||||||    
T  12140442 gtcctgtttggataaacaacttattttgcagcttata 12140478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 640 - 680
Target Start/End: Complemental strand, 12313363 - 12313323
Alignment:
Q  640 ctgtttggataaacaacttattttacagcttatagtataag 680  Q
    ||||||||||||||| |||||||| ||||||||||||||||    
T  12313363 ctgtttggataaacatcttattttgcagcttatagtataag 12313323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 691 - 725
Target Start/End: Original strand, 787276 - 787310
Alignment:
Q  691 ataagctatttctataactcaagataaaataaagt 725  Q
    |||||||||||||||||| ||||||||||||||||    
T  787276 ataagctatttctataacacaagataaaataaagt 787310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 639 - 697
Target Start/End: Complemental strand, 6167474 - 6167416
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagct 697  Q
    |||||||||||||||||| |  ||| | |||||||| ||||||||||||| ||||||||    
T  6167474 cctgtttggataaacaacatgatttgcggcttatagcataagtgcttatcgtataagct 6167416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 675 - 725
Target Start/End: Complemental strand, 17952841 - 17952792
Alignment:
Q  675 tataagtgcttatcatataagctatttctataactcaagataaaataaagt 725  Q
    |||||| |||||| ||||||||||||||||||||  |||||||||||||||    
T  17952841 tataagagcttat-atataagctatttctataacaaaagataaaataaagt 17952792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 639 - 725
Target Start/End: Complemental strand, 28039508 - 28039423
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagt 725  Q
    ||||||||||||||||||||| ||| ||| |||||| ||||| || ||| | |||||||||||   | || ||||||||||||||||    
T  28039508 cctgtttggataaacaacttaatttgcagtttatagcataagcgcatatga-ataagctattttggttacacaagataaaataaagt 28039423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 675 - 725
Target Start/End: Original strand, 31461368 - 31461417
Alignment:
Q  675 tataagtgcttatcatataagctatttctataactcaagataaaataaagt 725  Q
    |||||||| |||| ||||||||||||||||||||  |||||||||||||||    
T  31461368 tataagtggttat-atataagctatttctataacaaaagataaaataaagt 31461417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 675 - 725
Target Start/End: Complemental strand, 33197379 - 33197330
Alignment:
Q  675 tataagtgcttatcatataagctatttctataactcaagataaaataaagt 725  Q
    |||||||||||||| |||||||||||||||||||  |||||| ||||||||    
T  33197379 tataagtgcttatc-tataagctatttctataacaaaagatagaataaagt 33197330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 640 - 690
Target Start/End: Original strand, 36534668 - 36534717
Alignment:
Q  640 ctgtttggataaacaacttattttacagcttatagtataagtgcttatcat 690  Q
    |||||||||||||||||||||||| ||| |||||  |||||||||||||||    
T  36534668 ctgtttggataaacaacttatttt-cagtttataacataagtgcttatcat 36534717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 694 - 728
Target Start/End: Original strand, 41407023 - 41407057
Alignment:
Q  694 agctatttctataactcaagataaaataaagttaa 728  Q
    ||||||||||||||| |||||||||||||||||||    
T  41407023 agctatttctataacacaagataaaataaagttaa 41407057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 691 - 725
Target Start/End: Original strand, 43259779 - 43259813
Alignment:
Q  691 ataagctatttctataactcaagataaaataaagt 725  Q
    |||||||||||||||||| ||||||||||||||||    
T  43259779 ataagctatttctataacacaagataaaataaagt 43259813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 688
Target Start/End: Complemental strand, 626402 - 626353
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatc 688  Q
    |||||||||||||||||||||||||  ||||||| |||| || |||||||    
T  626402 cctgtttggataaacaacttattttgtagcttattgtattagcgcttatc 626353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 690
Target Start/End: Original strand, 2416194 - 2416242
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatagtataagtgcttatcat 690  Q
    ||||||||||||||||||||||| |||||||||| | |||| ||||||||    
T  2416194 tgtttggataaacaacttatttt-cagcttatagcacaagttcttatcat 2416242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 640 - 728
Target Start/End: Complemental strand, 34619553 - 34619466
Alignment:
Q  640 ctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagttaa 728  Q
    ||||||||||||||| |||| ||| |||||||||| |||| |||||||  ||||||| |||||||||||  |||||||||||| |||||    
T  34619553 ctgtttggataaacagcttaatttgcagcttatagcataattgcttat-gtataagccatttctataacaaaagataaaataaggttaa 34619466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 639 - 721
Target Start/End: Complemental strand, 33527323 - 33527242
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaata 721  Q
    |||||||||||||||| |||||||| ||||||| || ||||| |||||| | |||||||||||||| |||  |||||||||||    
T  33527323 cctgtttggataaacagcttattttgcagcttagagcataagcgcttatga-ataagctatttctaaaacaaaagataaaata 33527242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 644 - 725
Target Start/End: Complemental strand, 10199579 - 10199499
Alignment:
Q  644 ttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagt 725  Q
    |||| ||||||||||||||| |||||||||| ||||   ||||| | ||||| |||||||||||| ||||||||||||||||    
T  10199579 ttgggtaaacaacttattttgcagcttatagcataaacacttat-agataagttatttctataacccaagataaaataaagt 10199499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 687
Target Start/End: Original strand, 10280521 - 10280568
Alignment:
Q  640 ctgtttggataaacaacttattttacagcttatagtataagtgcttat 687  Q
    |||||||||||||||||||| |||||||||||||| ||||| ||||||    
T  10280521 ctgtttggataaacaacttagtttacagcttatagcataagcgcttat 10280568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 641 - 690
Target Start/End: Original strand, 51688576 - 51688624
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatagtataagtgcttatcat 690  Q
    ||||||||||||||||||| ||| |||||||||||| |||||||||||||    
T  51688576 tgtttggataaacaactta-tttgcagcttatagtacaagtgcttatcat 51688624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 693
Target Start/End: Complemental strand, 1729807 - 1729752
Alignment:
Q  638 tcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatata 693  Q
    ||||| |||||||||||||||| |||||||| ||||  |||||| |||||||||||    
T  1729807 tcctgcttggataaacaacttaatttacagcgtatatcataagttcttatcatata 1729752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 690
Target Start/End: Complemental strand, 27820531 - 27820481
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcat 690  Q
    ||||||||||||||||||||| ||| |||||||||| ||||| |||||||||    
T  27820531 cctgtttggataaacaactta-tttgcagcttatagcataagcgcttatcat 27820481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 662
Target Start/End: Original strand, 51190718 - 51190749
Alignment:
Q  631 aataaggtcctgtttggataaacaacttattt 662  Q
    ||||||||||||||||||||||||||||||||    
T  51190718 aataaggtcctgtttggataaacaacttattt 51190749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 641 - 687
Target Start/End: Complemental strand, 4920940 - 4920894
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatagtataagtgcttat 687  Q
    |||||||||||||| |||| ||| |||||||||| ||||||||||||    
T  4920940 tgtttggataaacagcttaatttgcagcttatagcataagtgcttat 4920894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 636 - 690
Target Start/End: Complemental strand, 5894357 - 5894304
Alignment:
Q  636 ggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcat 690  Q
    ||||||||||||||||||| ||||||| | ||||||||| | |||||||||||||    
T  5894357 ggtcctgtttggataaacagcttatttga-agcttatagcacaagtgcttatcat 5894304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 684 - 725
Target Start/End: Complemental strand, 36495351 - 36495309
Alignment:
Q  684 ttatcatataagctatttctataac-tcaagataaaataaagt 725  Q
    |||||||||||||||||||||||||  ||||||||||||||||    
T  36495351 ttatcatataagctatttctataacagcaagataaaataaagt 36495309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 675 - 725
Target Start/End: Complemental strand, 46499994 - 46499945
Alignment:
Q  675 tataagtgcttatcatataagctatttctataactcaagataaaataaagt 725  Q
    |||||||||||||| ||||||||||||||||||   |||||||||||||||    
T  46499994 tataagtgcttatc-tataagctatttctataagaaaagataaaataaagt 46499945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 640 - 690
Target Start/End: Complemental strand, 47499033 - 47498984
Alignment:
Q  640 ctgtttggataaacaacttattttacagcttatagtataagtgcttatcat 690  Q
    |||||||||||||||||||| ||| |||||||||| | |||||||||||||    
T  47499033 ctgtttggataaacaactta-tttgcagcttatagcacaagtgcttatcat 47498984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 723
Target Start/End: Original strand, 172285 - 172318
Alignment:
Q  690 tataagctatttctataactcaagataaaataaa 723  Q
    |||||||||||||||||||| |||||||||||||    
T  172285 tataagctatttctataactaaagataaaataaa 172318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 728
Target Start/End: Original strand, 36070144 - 36070232
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagttaa 728  Q
    |||||||| ||||||| | || ||| |||||||||| ||||| ||||||  |||  ||||||| ||||||  ||||||||||||||||||    
T  36070144 cctgtttgtataaacagcctaatttgcagcttatagcataagcgcttatg-tatgggctatttttataacaaaagataaaataaagttaa 36070232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 690
Target Start/End: Original strand, 48064189 - 48064238
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatagtataagtgcttatcat 690  Q
    ||||||||||||||||||| ||| |||||||||| |||||  ||||||||    
T  48064189 tgtttggataaacaacttaatttgcagcttatagcataagcccttatcat 48064238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 643 - 728
Target Start/End: Original strand, 52286576 - 52286660
Alignment:
Q  643 tttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagttaa 728  Q
    ||||||||||| ||||| ||||  ||||||  |||||| |||||| | ||||| |||||||| |||  ||||||||||||||||||    
T  52286576 tttggataaaccacttaatttagcgcttatcatataagcgcttatga-ataagatatttctacaacaaaagataaaataaagttaa 52286660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 641 - 696
Target Start/End: Complemental strand, 33826921 - 33826866
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagc 696  Q
    ||||||||||||||| ||||||| || |||| || |||||||||||||||||||||    
T  33826921 tgtttggataaacaatttattttgcatcttaaagcataagtgcttatcatataagc 33826866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 634 - 690
Target Start/End: Original strand, 24626159 - 24626214
Alignment:
Q  634 aaggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcat 690  Q
    |||| ||||||||||||||||||||| |||||||||||||| | || ||||||||||    
T  24626159 aaggacctgtttggataaacaactta-tttacagcttatagcacaaatgcttatcat 24626214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 682
Target Start/End: Complemental strand, 31776457 - 31776414
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataagtg 682  Q
    |||||||| |||||||||||||||| ||||||| ||||||||||    
T  31776457 cctgtttgaataaacaacttattttgcagcttaaagtataagtg 31776414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 675 - 725
Target Start/End: Original strand, 4248888 - 4248937
Alignment:
Q  675 tataagtgcttatcatataagctatttctataactcaagataaaataaagt 725  Q
    ||||||||||||| |||||||||||||| |||||  |||||||||||||||    
T  4248888 tataagtgcttat-atataagctatttcaataacaaaagataaaataaagt 4248937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 634 - 728
Target Start/End: Complemental strand, 11340805 - 11340713
Alignment:
Q  634 aaggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagttaa 728  Q
    |||||| |||||||||||| | |||| || |  ||||| | ||||||||||||| ||||||| || |||||||||  ||||||||||||||||||    
T  11340805 aaggtcttgtttggataaagaccttaattaagcgcttaca-tataagtgcttat-atataagataattctataacaaaagataaaataaagttaa 11340713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 640 - 674
Target Start/End: Complemental strand, 26550404 - 26550370
Alignment:
Q  640 ctgtttggataaacaacttattttacagcttatag 674  Q
    ||||||||||||||||| |||||||||||||||||    
T  26550404 ctgtttggataaacaacatattttacagcttatag 26550370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 29219940 - 29219902
Alignment:
Q  379 ataataatttgagagaatggaagtggttgaatgtaacca 417  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  29219940 ataataatttgagaaaatggaagtggttgaatgtgacca 29219902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 694
Target Start/End: Original strand, 3155057 - 3155110
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatagtataagtgcttatcatataa 694  Q
    |||||||||||||||||||||| |  |||||||| ||||| | |||||||||||    
T  3155057 tgtttggataaacaacttatttaagcgcttatagcataagcgtttatcatataa 3155110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 680
Target Start/End: Complemental strand, 7946065 - 7946024
Alignment:
Q  639 cctgtttggataaacaacttattttacagcttatagtataag 680  Q
    |||||||||||||||||||||||||  ||||||||| |||||    
T  7946065 cctgtttggataaacaacttattttgtagcttatagcataag 7946024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 25107099 - 25107144
Alignment:
Q  372 gacactgataataatttgagagaatggaagtggttgaatgtaacca 417  Q
    ||||||||||||||||||||||||| ||| || |||||||| ||||    
T  25107099 gacactgataataatttgagagaatagaaatgattgaatgtgacca 25107144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 690
Target Start/End: Original strand, 28619111 - 28619160
Alignment:
Q  641 tgtttggataaacaacttattttacagcttatagtataagtgcttatcat 690  Q
    |||| |||| |||||||||||||| || || |||||||||||||||||||    
T  28619111 tgttaggatgaacaacttattttaaagtttttagtataagtgcttatcat 28619160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 643 - 696
Target Start/End: Original strand, 33890664 - 33890717
Alignment:
Q  643 tttggataaacaacttattttacagcttatagtataagtgcttatcatataagc 696  Q
    |||||||||| |||||||||| |||||||||| ||||   ||||||||||||||    
T  33890664 tttggataaataacttattttgcagcttatagcataaacacttatcatataagc 33890717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 675 - 725
Target Start/End: Complemental strand, 1214 - 1165
Alignment:
Q  675 tataagtgcttatcatataagctatttctataactcaagataaaataaagt 725  Q
    |||||||||||||  |||||||||||||||||||  |||||||||||||||    
T  1214 tataagtgcttatg-tataagctatttctataacaaaagataaaataaagt 1165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 634 - 728
Target Start/End: Complemental strand, 1904 - 1812
Alignment:
Q  634 aaggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagttaa 728  Q
    |||||| |||||||||||| | |||| || |  ||||| | ||||||||||||| ||||||| || |||||||||  ||||||||||||||||||    
T  1904 aaggtcttgtttggataaagaccttaattaagcgcttaca-tataagtgcttat-atataagataattctataacaaaagataaaataaagttaa 1812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 634 - 728
Target Start/End: Complemental strand, 3994 - 3902
Alignment:
Q  634 aaggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaataaagttaa 728  Q
    |||||| |||||||||||| | |||| || |  ||||| | ||||||||||||| ||||||| || |||||||||  ||||||||||||||||||    
T  3994 aaggtcttgtttggataaagaccttaattaagcgcttaca-tataagtgcttat-atataagataattctataacaaaagataaaataaagttaa 3902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 675 - 725
Target Start/End: Original strand, 2761 - 2810
Alignment:
Q  675 tataagtgcttatcatataagctatttctataactcaagataaaataaagt 725  Q
    |||||||||||||  |||||||||||||||||||  |||||||||||||||    
T  2761 tataagtgcttatg-tataagctatttctataacaaaagataaaataaagt 2810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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