View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: SO5574B-LTR4-TNT-insertion-11 (Length: 831)
Name: SO5574B-LTR4-TNT-insertion-11
Description: SO5574B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5574B-LTR4-TNT-insertion-11 |
 | |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 819; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 819; E-Value: 0
Query Start/End: Original strand, 9 - 831
Target Start/End: Complemental strand, 50948496 - 50947674
Alignment:
| Q |
9 |
cttcccctattgttgtgccttgatactcctcttcttcctcaggagtcgtatcattctctgtcatcacagcctcgcatgacaaatcgagaagatccctaat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50948496 |
cttcccctattgttgtgccttgatactcctcttcttcctcaggagtcgtatcattctctgtcatcacagcctcgcatgacaaatcgagaagatccctaat |
50948397 |
T |
|
| Q |
109 |
tttgagatagtgtgctgcctgaaaaccagagaaagccaaatgataagacagtatgaaaaacctgaaaagagcaaagaaatggaacagtctgcaaattaca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50948396 |
tttgagatagtgtgctgcctgaaaaccagagaaagccaaatgataagacagtatgaaaaacctgaaaagagcaaagaaatggaacagtctgcaaattaca |
50948297 |
T |
|
| Q |
209 |
caaacaatatttaatacagccaactagagatagcatagtctctaaaagctggcaaacacactcaaactatatcagataaatttcctaaacacacaaattc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50948296 |
caaacaatatttaatacagccaactagagatagcatagtctctaaaagctggcaaacacactcaaactatatcagataaatttcctaaacacacaaattc |
50948197 |
T |
|
| Q |
309 |
acgaaaccaattctccgtcaacctcaaaaaacacttgctactttgaatgtaaccagtcttaattgctgcaagctctagagccacaacaacaccaagctag |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50948196 |
acgaaaccaattctccgtcaacctcaaaaaacacttgctactttgaatgtaaccagtcttaattgctgcaagctctagagccacaacaacaccaagctag |
50948097 |
T |
|
| Q |
409 |
acacatgtaaaaagctacataactcaacattttcaacctccaatcccatgtagcaaattcatgtactgtttgtgtttgaataagatttctcaacatatgc |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50948096 |
acacatgtaaaaagctacataactcaacattttcaacctccaatcccatgtagcaaattcatgtactgtttgtgtttgaataagatttctcaacatatgc |
50947997 |
T |
|
| Q |
509 |
tagtggttggactctactaagtggattttttggacgggaacaagtttactgttatgaatatgatgctagtatttagggtttgaaccctgcacctcctttg |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50947996 |
tagtggttggactctactaagtggattttttggacgggaacaagtttactgttatgaatatgatgctagtatttagggtttgaaccctgcacctcctttg |
50947897 |
T |
|
| Q |
609 |
cttaaagtttctttatggtcccttggttcaccaatctatctacctacttgagacgttcgattatgcaaattatactcggggtatatccaagttaatccgg |
708 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50947896 |
cttaaagtttctttatgatcccttggttcaccaatctatctacctacttgagacgttcgattatgcaaattatactcggggtatatccaagttaatccgg |
50947797 |
T |
|
| Q |
709 |
ctataacaatatctggttaacttatttagcttatgaccaaactatgaattttcaatggtcatttttattagttttttgttgagaatattgaaatgacaga |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50947796 |
ctataacaatatctggttaacttatttagcttatgaccaaactatgaattttcaatggtcatttttattagttttttgttgagaatattgaaatgacaga |
50947697 |
T |
|
| Q |
809 |
gacttggtaaaaatgtttctatt |
831 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
50947696 |
gacttggtaaaaatgtttctatt |
50947674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 50957726 - 50957492
Alignment:
| Q |
9 |
cttcccctattgttgtgccttgatactcctcttcttcctcaggagtcgtatcattctctgtcatcacagcctcgcatgacaaatcgagaagatccctaat |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||| || || ||| || || |||||||||||||||||||||||||||||| |||||||| |
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| T |
50957726 |
cttcccctaatgttgtgccttgatactcctcttctttctcaggaatcataccatcctttgccatcacagcctcgcatgacaaatcgagaaggtccctaat |
50957627 |
T |
|
| Q |
109 |
tttgagatagtgtgctgcctg--aaaaccagagaaagccaaatgataagacagtatgaaaaacctgaaaagagcaaagaaat---ggaacagtctgcaaa |
203 |
Q |
| |
|
||||||||||| ||||||||| ||||||||| |||| | || ||||| ||||||||||| ||||| ||||||||||| |||| | |||||| |
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|
| T |
50957626 |
tttgagatagtttgctgcctgaaaaaaccaga-caagc---agaattagacaatatgaaaaaccagaaaaaagcaaagaaatataacaacaatttgcaaa |
50957531 |
T |
|
| Q |
204 |
ttacacaaacaatatttaatacagccaactagagatagcatag |
246 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
50957530 |
ttacacaaacaa----taatacagccaactagatatagcatag |
50957492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 28 - 298
Target Start/End: Complemental strand, 15855942 - 15855663
Alignment:
| Q |
28 |
ttgatactcctcttcttcctcaggagtcgtatcattctctgtcatcacagcctcgcatgacaaatcgagaagatccctaattttgagatagtgtgctgcc |
127 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| || | |||||| ||||||||||||||| | ||| ||||||||||||||||||||||||||| |
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|
| T |
15855942 |
ttgatactcctcttcttctcgaggagtcatatcattctttgccgtcacagtctcgcatgacaaatcaacaaggtccctaattttgagatagtgtgctgcc |
15855843 |
T |
|
| Q |
128 |
tg-aaaaccagagaaagccaaatgataagacagtatgaaaaacctgaaaagagcaaag-aaatggaacagtctgcaaattacac--aaacaatatttaat |
223 |
Q |
| |
|
|| |||||||| | ||||||| | ||| |||| ||| ||||||| ||||||| ||||| |||| |||||| | || ||||||| |||||| |||| |
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|
| T |
15855842 |
tgaaaaaccagtg-aagccaatttatatgacaatataaaaaaccagaaaagatcaaagaaaatataacagtttacagattacaccgaaacaa----taat |
15855748 |
T |
|
| Q |
224 |
acagccaactagag----------atagcatagtctctaaaagctggcaaacacactcaaactatatcagataaatttcctaaac |
298 |
Q |
| |
|
|| || |||||||| |||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
15855747 |
accgcaaactagagataacgtagcatagcatagtctataaaagctggcaaacacatccaaactatttcagataaatttcctaaac |
15855663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 583 - 777
Target Start/End: Complemental strand, 15855600 - 15855407
Alignment:
| Q |
583 |
agggtttgaaccctgcacctcctttgcttaaagtttctttatggtcccttggttcaccaatctatctacctacttgagacgttcgattatgcaaattata |
682 |
Q |
| |
|
|||||||||||||| |||| |||| ||||||||||||||||||||||| | ||||||||| ||| ||| ||||||| ||||||| ||||||| ||||||| |
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|
| T |
15855600 |
agggtttgaaccctacaccacctt-gcttaaagtttctttatggtccccttgttcaccaacctagctaactacttgcgacgttcaattatgc-aattata |
15855503 |
T |
|
| Q |
683 |
ctcggggtatatccaag-ttaatcc-ggctataacaatatctggttaa-cttatttagcttatgaccaaactatgaattttcaatggtcatttttatt |
777 |
Q |
| |
|
||||||| |||||||| || |||| |||||||||||| || ||| |||||||||||||||||||||||||| |||||||| || |||||||| |
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|
| T |
15855502 |
ctcgggg--tatccaagtttgatccaaactataacaatatttgactaattttatttagcttatgaccaaactatgatttttcaatattcttttttatt |
15855407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 616 - 785
Target Start/End: Complemental strand, 50957258 - 50957089
Alignment:
| Q |
616 |
tttctttatggtcccttggttcaccaatctatctacctacttgagacgttcgattatgcaaattatactcggggtatatccaagtt--aatccggctata |
713 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| | ||||||| | | || || || |
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|
| T |
50957258 |
tttctttatagtcccttggttcaccaatctagaaacctacttgagacattcgattatgcaaattatactaggg--tcacccaagtttgatttcgactgta |
50957161 |
T |
|
| Q |
714 |
acaatatctggttaac-ttatttagcttatgaccaaactatgaattttcaatggtcatttttattagtttttt |
785 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||||||| | |||||||||||| || ||||||||| |||||| |
|
|
| T |
50957160 |
acaatatctgggtaactttatttagcttccaaccaaac-aagaattttcaatgttcttttttattattttttt |
50957089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 389 - 472
Target Start/End: Complemental strand, 50957456 - 50957370
Alignment:
| Q |
389 |
ccacaacaacaccaa-gctagacacatgtaaaaagctacataactc--aacattttcaacctccaatcccatgtagcaaattcatgt |
472 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||| ||||||| |||||| |||||||| ||||||| | |||||||||||| |
|
|
| T |
50957456 |
ccacaacaacaccaacgctggacacatgtaaaaagctatataactctcaacattcccaacctccgatcccatattgcaaattcatgt |
50957370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 50964478 - 50964404
Alignment:
| Q |
84 |
atgacaaatcgagaagatccctaattttgagatagtgtgctgcctgaaaa-ccagagaaagccaaatgataagac |
157 |
Q |
| |
|
||||||||| || ||||||| |||||| |||||| | ||||||||||||| | |||||||||||||| ||||||| |
|
|
| T |
50964478 |
atgacaaattgataagatccgtaatttggagatactttgctgcctgaaaatcaagagaaagccaaattataagac |
50964404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 295 - 821
Target Start/End: Complemental strand, 33631513 - 33630987
Alignment:
| Q |
295 |
aaacacacaaattcacgaaaccaattctccgtcaacctcaaaaaacacttgctactttgaatgtaaccagtcttaattgctgcaagctctagagccacaa |
394 |
Q |
| |
|
|||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| | ||||||||| |
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|
| T |
33631513 |
aaactcacgaattcacgaaaccaagtctccgtaaacctcaaaaaacacttgctactttgaatttaaccagtctt----gctgcaagcaccggagccacaa |
33631418 |
T |
|
| Q |
395 |
caacaccaag--------ctagacacatgtaaaaagctacataact--caacattttcaacctccaatcccatgtagcaaattcatgtactgtttgtgtt |
484 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33631417 |
caacaccaacactagagtctagacacatttaaaaagctacataactttcaacatttgcaacctccaatcccatgttgcaaattcatgtactgtttgtgtt |
33631318 |
T |
|
| Q |
485 |
t-----gaataagatttctcaacatatgctagtggttggactctactaagtggattttttggacggg--aacaagtttactgttatgaat-atgatgcta |
576 |
Q |
| |
|
| |||||| ||||||||||||||||||||| | |||||||| ||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
33631317 |
tactttgaataaaatttctcaacatatgctagtga------------------aatttttggatgggcaaacaagtttactgttatgaattatgatgcta |
33631236 |
T |
|
| Q |
577 |
gtatttagggtttgaaccctgcacctcctttgcttaaagtttctttatggtcccttggttcaccaatctatctacctacttgagacgttcgattatgcaa |
676 |
Q |
| |
|
|| |||||||||||||| || |||||||||||||||| ||||||||||||||| | ||||||||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
33631235 |
gtttttagggtttgaactttgtacctcctttgcttaaaatttctttatggtcccctagttcaccaatctagctacctacttgagatgttcgattatgaaa |
33631136 |
T |
|
| Q |
677 |
attatactcggggtatatccaag-ttaatcc-ggc-tataacaatatctggttaac-ttatttagcttatgaccaaactatgaattttcaatggtcattt |
772 |
Q |
| |
|
|||| ||||| || |||||||| ||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
33631135 |
attaaactcgtgg--tatccaagtttaatcctggcttataacaatatctggttaactttatttagcttatgaccaaactatgcattttcaatggtctttt |
33631038 |
T |
|
| Q |
773 |
ttattagttt-tttgttgagaatattgaaatgacagagactt-ggtaaaaa |
821 |
Q |
| |
|
|||||| ||| | |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
33631037 |
ttattattttgtgcgttgagaaaattgaaatgacagagacttaggtaaaaa |
33630987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 33631773 - 33631514
Alignment:
| Q |
13 |
ccctattgttgtgccttgatactcctcttcttcctcaggagtcgtatcattctctgtcatcacagcctcgcatgacaaatcgagaagatccctaattttg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33631773 |
ccctattgttgtgccttgatactcctcttcttcctcaggagtcgtagcattctctgtcatcacagcctcgcatgacaaatccagaagatccctaattttg |
33631674 |
T |
|
| Q |
113 |
agatagtgtgctgcctg-aaaaccagagaaagccaaatgataagacagtatgaaaaacctgaaaagagcaaagaaatggaacagtctgcaaattacac-- |
209 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| | |||||| |||||||||||| |
|
|
| T |
33631673 |
agatagtgtgctgcctgaaaaaccagagaaagtcaaatgataagacagtatgaaaaaccagaaaagagcaatgaattataacagtatgcaaattacacaa |
33631574 |
T |
|
| Q |
210 |
aaacaatatttaatacagccaactagagatagcatagtctctaaaagctggcaaacacac |
269 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33631573 |
aaacaataattaataaagccaactagagatagcatagtctctaaaagctagcaaacacac |
33631514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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