View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5574B-LTR4-TNT-insertion-12 (Length: 315)
Name: SO5574B-LTR4-TNT-insertion-12
Description: SO5574B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5574B-LTR4-TNT-insertion-12 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 289
Target Start/End: Original strand, 16438410 - 16438690
Alignment:
| Q |
9 |
gacatagcgttataattatttttggcacttctttcttatttacaagttttgcttagtcccttttgattttgaacataaagatgaatgtgtattacaagct |
108 |
Q |
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| T |
16438410 |
gacatagcgttataattatttttggcacttctttcttatttacaagttttgcttagtcccttttgattttgaacataaagatgaatgtgtattacaagct |
16438509 |
T |
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| Q |
109 |
tcatatagatcttgtacgtgaatttaaatgtgtccaattcagcatatttgactaacaatttaagctacttgttgtaatttgtgggagtggaaaccaactt |
208 |
Q |
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| T |
16438510 |
tcatatagatcttgtacgtgaatttaaatgtgtccaattcagcatatttgactaacaatttaagctacttgttgtaatttgtgggagtggaaaccaactt |
16438609 |
T |
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| Q |
209 |
tgaagcatgatttgtggaatttcatatcaaatctaaaattagtgaggtctttatgtccatcaatactttggtaacaattgg |
289 |
Q |
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| T |
16438610 |
tgaagcatgatttgtggaatttcatatcaaatctaaaattagtgaggtctttatgtccatcaatactttggtaacaattgg |
16438690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 16080795 - 16080857
Alignment:
| Q |
177 |
ttgttgtaatttgtgggagtggaaaccaactttgaagcatgatttgtggaatttcatatcaaa |
239 |
Q |
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| T |
16080795 |
ttgttgtaatttgtaggagtggataccagctttgaagaatgaactgtggactttcatatcaaa |
16080857 |
T |
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