View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: SO5574B-LTR4-TNT-insertion-3 (Length: 669)

Name: SO5574B-LTR4-TNT-insertion-3
Description: SO5574B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] SO5574B-LTR4-TNT-insertion-3
SO5574B-LTR4-TNT-insertion-3
[»] chr4 (9 HSPs)
chr4 (12-658)||(547249-547895)
chr4 (164-631)||(55907997-55908464)
chr4 (251-624)||(3438009-3438381)
chr4 (34-134)||(6007173-6007273)
chr4 (27-134)||(1527362-1527469)
chr4 (487-624)||(53761380-53761517)
chr4 (513-624)||(6006698-6006809)
chr4 (27-134)||(12118466-12118573)
chr4 (534-624)||(641281-641371)
[»] chr8 (3 HSPs)
chr8 (13-134)||(17627168-17627289)
chr8 (251-624)||(17627415-17627788)
chr8 (171-216)||(17627311-17627356)
[»] chr1 (2 HSPs)
chr1 (505-624)||(19468118-19468237)
chr1 (337-475)||(17352160-17352298)
[»] chr7 (4 HSPs)
chr7 (508-624)||(10169752-10169868)
chr7 (508-624)||(10177277-10177393)
chr7 (266-311)||(10615270-10615315)
chr7 (592-624)||(10167380-10167412)
[»] chr2 (1 HSPs)
chr2 (268-631)||(1037040-1037400)
[»] chr6 (8 HSPs)
chr6 (515-658)||(7993805-7993948)
chr6 (506-624)||(19632785-19632903)
chr6 (508-658)||(6596562-6596712)
chr6 (503-657)||(6602816-6602970)
chr6 (488-548)||(8913665-8913725)
chr6 (559-621)||(6410376-6410438)
chr6 (570-624)||(10579433-10579487)
chr6 (559-624)||(7131984-7132049)
[»] scaffold0262 (1 HSPs)
scaffold0262 (505-631)||(280-406)
[»] chr5 (3 HSPs)
chr5 (511-624)||(20477701-20477814)
chr5 (399-471)||(41889058-41889130)
chr5 (295-475)||(41900938-41901118)
[»] chr3 (2 HSPs)
chr3 (266-465)||(13470109-13470311)
chr3 (559-621)||(514392-514454)


Alignment Details
Target: chr4 (Bit Score: 626; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 12 - 658
Target Start/End: Complemental strand, 547895 - 547249
Alignment:
Q  12 ggctatgtcaacagcgcttcctaagctccgcaaggttaatttatctggtcattactatataaatgactcattgctttttcacttgtgtcaaagttgtgag 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  547895 ggctatgtcaacagcgcttcctaagctccgcaaggttaatttatctggtcattactatataaatgactcattgctttttcacttgtgtcaaagttgtgag 547796  T
Q  112 tttctcgaagagtttgtgatgttagaccattcatcacgttggagtccatccctaactaatgatggcatagcttctgctatccgtgtgagaccatctttga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  547795 tttctcgaagagtttgtgatgttagaccattcatcacgttggagtccatccctaactaatgatggcatagcttctgctatccgtgtgagaccatctttga 547696  T
Q  212 ggtctctctccattaaatggccgtcaaagggaaggcatgacattagttcgcaccttattgactcgttgatgtgtttgaagggcttaacttgtcttgattt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  547695 ggtctctctccattaaatggccgtcaaagggaaggcatgacattagttcgcaccttattgactcgttgatgtgtttgaagggcttaacttgtcttgattt 547596  T
Q  312 tcggtcttcacgtatctcggatatgttgctctcctctattgcaatggaagctattcctttgagaaagcttgtcctccaaaattgtttcggctatagttat 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  547595 tcggtcttcacgtatctcggatatgttgctctcctctattgcaatggaagctattcctttgagaaagcttgtcctccaaaattgtttcggctatagttat 547496  T
Q  412 gctggaatatcttgttttttgtccaagtgccaacatatccaacatttagatcttcaaaatgctgnnnnnnngactaatcaacatgttcttgacttgtctt 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  547495 gctggaatatcttgttttttgtccaagtgccaacatatccaacatttagatcttcaaaatgctgtttttttgactaatcaacatgttcttgacttgtctt 547396  T
Q  512 tgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtga 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  547395 tgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtga 547296  T
Q  612 gatcaaaatggaactcacaaaaattgggatggagagtgtagagaatt 658  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  547295 gatcaaaatggaactcacaaaaattgggatggagagtgtagagaatt 547249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 164 - 631
Target Start/End: Original strand, 55907997 - 55908464
Alignment:
Q  164 taactaatgatggcatagcttctgctatccgtgtgagaccatctttgaggtctctctccattaaatggccgtcaaagggaaggcatgaca---ttagttc 260  Q
    ||||| |||||||  | |||||||||||||||| ||||||  |||||| |||||| ||| ||| ||||    |||| ||||| |||||||   || ||||    
T  55907997 taactcatgatggtgtcgcttctgctatccgtgagagacctactttgaagtctctatccgttagatggagaacaaatggaagccatgacaacattggttc 55908096  T
Q  261 gcaccttattgactcgttgatgtgtttgaagggcttaacttgtcttgattttcggtcttcacgtatctcggatatgttgctctcctctattgcaatggaa 360  Q
      || | |||| ||||||| || ||||||| ||||||||||||||| ||||   |||||  || |||||||||   ||||| |  ||||||||||||| |    
T  55908097 aaacttcattggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcggatgaattgcttttttctattgcaatggga 55908196  T
Q  361 gctattcctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctggaatatcttgttttttgtccaagtgccaacatatccaacatttag 460  Q
    | | ||||||||||||  |||||||||||||||||   |||||||| ||||| ||||||||  | ||| || ||||||||    | ||| |||||||| |    
T  55908197 ggtcttcctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaagtg---tcgtatacaacatttgg 55908293  T
Q  461 atcttcaaaatgctgnnnnnnngactaatcaacatgttcttgacttgtctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaact 560  Q
    |||||||||||||         || | ||||  ||||    || ||||||||||||||||||||||||| || ||||||||||||| | ||| |    ||    
T  55908294 atcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgct 55908393  T
Q  561 cacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaactcacaa 631  Q
    |||| | |  ||| |||||||||||||||| |||||| ||||||||| |||| |||||||||||| |||||    
T  55908394 cacagactcggccatgtttgcactcgttaggaattgtccttcacttattgaggtcaaaatggaacacacaa 55908464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 251 - 624
Target Start/End: Original strand, 3438009 - 3438381
Alignment:
Q  251 acattagttcgcaccttattgactcgttgatgtgtttgaagggcttaacttgtcttgattttcggtcttcacgtatctcggatatgttgctctcctctat 350  Q
    |||||| ||| ||| | ||||||| |||| || || ||||||| |||||||||||||||||   ||||||| ||||| |||||   || || ||||||||    
T  3438009 acattaattcacacttcattgacttgttggtgagtctgaagggattaacttgtcttgatttgtcgtcttcatgtatcccggatgaattactttcctctat 3438108  T
Q  351 tgcaatggaagctattcctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctggaatatcttgttttttgtccaagtgccaacatatc 450  Q
    |||||| | || | |||||||||||| |||||||||||| |||||   ||||||||||||||||| ||| | || | | || |||||||| |||  |||     
T  3438109 tgcaattggaggtcttcctttgagaaggcttgtcctccacaattgcaccggctatagttatgctgaaatcttttctctgttatccaagtgtcaatgtata 3438208  T
Q  451 caacatttagatcttcaaaatgctgnnnnnnngactaatcaacatgttcttgacttgtctttgtttcttggtgatttggagtttataaaccttagtcagt 550  Q
    |||||||| |||||||||||  ||         | | |||  |||||| |  | |||||  |||||| ||||||||||| || ||||||||||||| | |    
T  3438209 caacatttggatcttcaaaa-acttactttctaaatgatcgccatgttgtcaagttgtccatgtttcatggtgatttggtgtctataaaccttagtgatt 3438307  T
Q  551 gtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaa 624  Q
    ||  |   |||||||| |||||||| ||| ||||| ||||||||||| |||||||||||||||| |||||||||    
T  3438308 gttcgatgctcacaaaattagccttattttcactcattagtaattgtccttcacttagtgagataaaaatggaa 3438381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 6007273 - 6007173
Alignment:
Q  34 aagctccgcaaggttaatttatctggtcattactatataaatgactcattgctttttcacttgtgtcaaagttgtgagtttctcgaagagtttgtgatgt 133  Q
    ||||| |||||||||||| | ||||||||||||||||| || |||||| |||||||  || ||||| | || ||||||||||| |||||| |||||||||    
T  6007273 aagcttcgcaaggttaatctttctggtcattactatatgaaagactcaatgcttttgaacatgtgtaagaggtgtgagtttctagaagagattgtgatgt 6007174  T
Q  134 t 134  Q
    |    
T  6007173 t 6007173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 1527362 - 1527469
Alignment:
Q  27 gcttcctaagctccgcaaggttaatttatctggtcattactatataaatgactcattgctttttcacttgtgtcaaagttgtgagtttctcgaagagttt 126  Q
    |||||||||||||| |||||||||| | ||||||||| |||||  ||||||||| |||||||| ||||||||| ||| |||||  |||||  ||||| ||    
T  1527362 gcttcctaagctccacaaggttaatctctctggtcatcactatgcaaatgactcgttgcttttgcacttgtgtaaaaattgtgtatttcttcaagagatt 1527461  T
Q  127 gtgatgtt 134  Q
     |||||||    
T  1527462 ttgatgtt 1527469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 487 - 624
Target Start/End: Original strand, 53761380 - 53761517
Alignment:
Q  487 aatcaacatgttcttgacttgtctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcg 586  Q
    |||||||||||| |  | ||||||||| ||||||||||||||| ||  |||||||||||||  |||    |  ||||||| || |||||||||||||| |    
T  53761380 aatcaacatgttgtaaatttgtctttgcttcttggtgatttggtgtccataaaccttagtcgttgttataagatcacaaaattggccttgtttgcacttg 53761479  T
Q  587 ttagtaattgtgcttcacttagtgagatcaaaatggaa 624  Q
     ||  || ||| ||||||||||||||||||||||||||    
T  53761480 ctaaaaactgtccttcacttagtgagatcaaaatggaa 53761517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 513 - 624
Target Start/End: Complemental strand, 6006809 - 6006698
Alignment:
Q  513 gtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgag 612  Q
    |||||||| |||||||| |||||||||  ||||| | ||||     ||||||||||||||||||||||||||| |||| || |||| |  ||||||||||    
T  6006809 gtttcttgctgatttggtgtttataaatattagtaaatgtgatagcctcacaaatttagccttgtttgcactccttaggaactgtgataaacttagtgag 6006710  T
Q  613 atcaaaatggaa 624  Q
     ||| |||||||    
T  6006709 gtcataatggaa 6006698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 12118466 - 12118573
Alignment:
Q  27 gcttcctaagctccgcaaggttaatttatctggtcattactatataaatgactcattgctttttcacttgtgtcaaagttgtgagtttctcgaagagttt 126  Q
    ||||||||||||||| | ||||||| | |||| |||| |||||  ||||| ||| |||||||| ||||||| | ||| ||||| ||||||  ||||| ||    
T  12118466 gcttcctaagctccgtagggttaatctctctgatcatcactatgcaaatggctcgttgcttttgcacttgtataaaaattgtgtgtttcttcaagagatt 12118565  T
Q  127 gtgatgtt 134  Q
    ||||||||    
T  12118566 gtgatgtt 12118573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 624
Target Start/End: Complemental strand, 641371 - 641281
Alignment:
Q  534 tataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaa 624  Q
    ||||||||||||||| |||||  | |||||||| | | ||||||||||||| | | | |||||| ||||||||| ||| || |||||||||    
T  641371 tataaaccttagtcattgtggtaagctcacaaaatcaaccttgtttgcacttgctggaaattgtccttcacttaatgatattaaaatggaa 641281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 8e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 17627168 - 17627289
Alignment:
Q  13 gctatgtcaacagcgcttcctaagctccgcaaggttaatttatctggtcattactatataaatgactcattgctttttcacttgtgtcaaagttgtgagt 112  Q
    ||||||||||  | ||||||||||||||||||| | ||||||||| |||||||| |||||| ||||||||| ||||| ||||||||| ||| ||||||||    
T  17627168 gctatgtcaatggtgcttcctaagctccgcaagataaatttatctcgtcattacgatataagtgactcattacttttgcacttgtgtaaaaattgtgagt 17627267  T
Q  113 ttctcgaagagtttgtgatgtt 134  Q
    ||||||||||| ||||| ||||    
T  17627268 ttctcgaagaggttgtgttgtt 17627289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 251 - 624
Target Start/End: Original strand, 17627415 - 17627788
Alignment:
Q  251 acattagttcgcaccttattgactcgttgatgtgtttgaagggcttaacttgtcttgattttcggtcttcacgtatctcggatatgttgctctcctctat 350  Q
    |||| ||||| ||| ||| ||||||| || || ||||||| || |||||   ||||||||| | || ||  || ||||| |||||||| ||||| |||||    
T  17627415 acatcagttcacactttactgactcgctggtgagtttgaaagggttaacaaatcttgatttgccgtttttgcgcatctcagatatgttcctctcttctat 17627514  T
Q  351 tgcaatggaagctattcctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctggaatatcttgttttttgtccaagtgccaacatatc 450  Q
    |||||| |||| |||| ||||||||| ||||||||||  | ||||  |   |||||||||| ||||||||| || ||| || |||| ||| |||  ||||    
T  17627515 tgcaattgaagttatttctttgagaaggcttgtcctcagagattgcattaactatagttattctggaatattttctttgttatccatgtgtcaatgtatc 17627614  T
Q  451 caacatttagatcttcaaaatgctgnnnnnnngactaatcaacatgttcttgacttgtctttgtttcttggtgatttggagtttataaaccttagtcagt 550  Q
    |||||||| ||||||||  |||||        || |||||||||| || |||| |||||||  ||||||||| |||||| || | ||||||||||| | |    
T  17627615 caacatttggatcttcagtatgcttattttttgaataatcaacatatttttgagttgtcttcatttcttggtaatttggtgtctgtaaaccttagttatt 17627714  T
Q  551 gtgggcaactc-acaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaa 624  Q
    || ||   ||| || || | |||||||||| ||||||||||||| ||| ||||||||| |||||| |||||||||    
T  17627715 gtcggatgctcgacgaa-tcagccttgttttcactcgttagtaaatgtccttcacttaatgagataaaaatggaa 17627788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 17627311 - 17627356
Alignment:
Q  171 tgatggcatagcttctgctatccgtgtgagaccatctttgaggtct 216  Q
    ||||||||| |||||||| ||||||| |||||||||||||||||||    
T  17627311 tgatggcattgcttctgccatccgtgagagaccatctttgaggtct 17627356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 505 - 624
Target Start/End: Original strand, 19468118 - 19468237
Alignment:
Q  505 ttgtctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcac 604  Q
    ||||||||||||||||||||||| | || ||||||||||||| | |||  | | |||||| ||| | |||||||| |||||||||| |||||| ||||||    
T  19468118 ttgtctttgtttcttggtgatttagtgtctataaaccttagtgaatgtatggacctcacatattcaaccttgtttacactcgttaggaattgtccttcac 19468217  T
Q  605 ttagtgagatcaaaatggaa 624  Q
    ||||||||||||||||||||    
T  19468218 ttagtgagatcaaaatggaa 19468237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 475
Target Start/End: Complemental strand, 17352298 - 17352160
Alignment:
Q  337 ttgctctcctctattgcaatggaagctattcctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctggaatatcttgttttttgtcca 436  Q
    ||||||||||||||||||| ||| | | ||||||| || |  |||||||| ||| |||     ||||| |||||||||||||  | || ||| || ||||    
T  17352298 ttgctctcctctattgcaaaggagggttttcctttcaggagacttgtccttcaatattccactggctacagttatgctggaactttttctttgttatcca 17352199  T
Q  437 agtgccaacatatccaacatttagatcttcaaaatgctg 475  Q
    ||||||||| |||||||||||  |||||||||| |||||    
T  17352198 agtgccaacgtatccaacattaggatcttcaaactgctg 17352160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 508 - 624
Target Start/End: Original strand, 10169752 - 10169868
Alignment:
Q  508 tctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcactta 607  Q
    ||||||||| |||||||||| | || | ||||||||||||| |||  | |  ||||| ||| | ||||||||||||||||||| |||||| |||||||||    
T  10169752 tctttgtttattggtgatttagtgtctgtaaaccttagtcaatgtttggagatcacatattcatccttgtttgcactcgttaggaattgtccttcactta 10169851  T
Q  608 gtgagatcaaaatggaa 624  Q
    |||||||||||||||||    
T  10169852 gtgagatcaaaatggaa 10169868  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 508 - 624
Target Start/End: Original strand, 10177277 - 10177393
Alignment:
Q  508 tctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcactta 607  Q
    ||||||||| |||||||||| | || | ||||||||||||| |||  | |  ||||| ||| | ||||||||||||||||||| |||||| |||||||||    
T  10177277 tctttgtttattggtgatttagtgtctgtaaaccttagtcaatgtttggagatcacatattcatccttgtttgcactcgttaggaattgtccttcactta 10177376  T
Q  608 gtgagatcaaaatggaa 624  Q
    |||||||||||||||||    
T  10177377 gtgagatcaaaatggaa 10177393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 10615315 - 10615270
Alignment:
Q  266 ttattgactcgttgatgtgtttgaagggcttaacttgtcttgattt 311  Q
    |||||||||| ||| || ||||||||||||| ||||||||||||||    
T  10615315 ttattgactcattggtgagtttgaagggcttgacttgtcttgattt 10615270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 624
Target Start/End: Original strand, 10167380 - 10167412
Alignment:
Q  592 aattgtgcttcacttagtgagatcaaaatggaa 624  Q
    |||||| ||||||||||||||||||||||||||    
T  10167380 aattgtccttcacttagtgagatcaaaatggaa 10167412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 268 - 631
Target Start/End: Original strand, 1037040 - 1037400
Alignment:
Q  268 attgactcgttgatgtgtttgaagggcttaacttgtcttgattttcggtcttcacgtatctcggatatgttgctctcctctattgcaatggaagctattc 367  Q
    |||| ||||||| || ||||||| ||||||||||||||| ||||    ||||  || || ||||||   ||||| |  ||||||||||||| || | |||    
T  1037040 attggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcatctttgcgcatttcggatgaattgcttttttctattgcaatgggaggtcttc 1037139  T
Q  368 ctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctggaatatcttgttttttgtccaagtgccaacatatccaacatttagatcttca 467  Q
    |||||||||  |||||||||||||||||   | |||||| ||||| ||||||||  | ||| || |||||||| |    ||| |||||||| ||||||||    
T  1037140 ctttgagaagacttgtcctccaaaattgcaccagctataattatgttggaatatactctttgttatccaagtgtcg---tatacaacatttggatcttca 1037236  T
Q  468 aaatgctgnnnnnnngactaatcaacatgttcttgacttgtctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaat 567  Q
    ||||||         || | ||||  ||||    || ||||||||||||||||||||||||| || ||||||||||||| | ||| |    |||||| |     
T  1037237 aaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagac 1037336  T
Q  568 ttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaactcacaa 631  Q
    |  ||| |||||||||||||||| |||||| ||||||||| |||| |||||||||||| |||||    
T  1037337 tcggccatgtttgcactcgttaggaattgtccttcacttattgaggtcaaaatggaacacacaa 1037400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 515 - 658
Target Start/End: Original strand, 7993805 - 7993948
Alignment:
Q  515 ttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagat 614  Q
    ||||||||||||||| || ||||||||||||| | ||| ||   |||||| | | |||||||||| |||||||||| || ||| | |||||| |||| ||    
T  7993805 ttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaat 7993904  T
Q  615 caaaatggaactcacaaaaattgggatggagagtgtagagaatt 658  Q
    ||||||||||| ||||||  ||||||| | ||||||||||||||    
T  7993905 caaaatggaacgcacaaatgttgggatagggagtgtagagaatt 7993948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 506 - 624
Target Start/End: Complemental strand, 19632903 - 19632785
Alignment:
Q  506 tgtctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcact 605  Q
    |||||||||| | | ||||||||| || ||| ||||||| | | ||| || | |||||| | ||| | |||||| | ||||||||||||||| |||||||    
T  19632903 tgtctttgttgcatagtgatttggtgtctatcaaccttaatgactgttggaagctcacagaattatcattgttttcgctcgttagtaattgtccttcact 19632804  T
Q  606 tagtgagatcaaaatggaa 624  Q
    |||||||||||||||||||    
T  19632803 tagtgagatcaaaatggaa 19632785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 508 - 658
Target Start/End: Original strand, 6596562 - 6596712
Alignment:
Q  508 tctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcactta 607  Q
    ||||||||||||||||||||||  | ||||||||||| ||| |||      |||||| | | |||| ||||| | ||||| || |||||| |||| ||||    
T  6596562 tctttgtttcttggtgatttggtttctataaaccttaatcattgttcaaggctcacagaatcagccgtgttttccctcgtaagaaattgtccttcgctta 6596661  T
Q  608 gtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaatt 658  Q
    |||||||||||||| ||  ||||   ||||||| |||||||||||||||||    
T  6596662 gtgagatcaaaatgcaaaacacagctattgggacggagagtgtagagaatt 6596712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 503 - 657
Target Start/End: Original strand, 6602816 - 6602970
Alignment:
Q  503 acttgtctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttc 602  Q
    |||| ||||||||||||  | |||||| || ||||||||||||| | |||    | |||||| | ||| |||||||| |||| ||||  || ||| ||||    
T  6602816 acttttctttgtttcttactaatttggtgtctataaaccttagtgaatgttcctacctcacagaattatccttgttttcacttgttaaaaactgtccttc 6602915  T
Q  603 acttagtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaat 657  Q
    ||||||||||||||||||||||  |||| | |||||||  |||| ||||||||||    
T  6602916 acttagtgagatcaaaatggaagacacagatattgggaaagagaatgtagagaat 6602970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 488 - 548
Target Start/End: Original strand, 8913665 - 8913725
Alignment:
Q  488 atcaacatgttcttgacttgtctttgtttcttggtgatttggagtttataaaccttagtca 548  Q
    ||||||||||| |  | |||||||||||||||||| |||||| || |||||||||||||||    
T  8913665 atcaacatgttgtcaagttgtctttgtttcttggtaatttggtgtctataaaccttagtca 8913725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 559 - 621
Target Start/End: Complemental strand, 6410438 - 6410376
Alignment:
Q  559 ctcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatg 621  Q
    |||||| | ||||||  |||| |||||||||| |||||| ||||||||| |||||||||||||    
T  6410438 ctcacagaattagcccagttttcactcgttagaaattgtccttcacttaatgagatcaaaatg 6410376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 570 - 624
Target Start/End: Original strand, 10579433 - 10579487
Alignment:
Q  570 agccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaa 624  Q
    |||||||||| | ||||| || |||||| |||| |||||||||||||||||||||    
T  10579433 agccttgttttccctcgtaagaaattgtccttcgcttagtgagatcaaaatggaa 10579487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 624
Target Start/End: Complemental strand, 7132049 - 7131984
Alignment:
Q  559 ctcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaa 624  Q
    |||||| | |||||||||| | |||||||||| || ||  |||||||||||||| |||||||||||    
T  7132049 ctcacagaattagccttgtattcactcgttagaaactgcccttcacttagtgagttcaaaatggaa 7131984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 505 - 631
Target Start/End: Complemental strand, 406 - 280
Alignment:
Q  505 ttgtctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcac 604  Q
    ||||||||||||||||| ||||||| || |||||| |||||| | ||| |    |||||| | | | || |||||||||||||||| |||| | ||||||    
T  406 ttgtctttgtttcttggcgatttggtgtctataaatcttagtgaatgtagcatgctcacatactcaaccatgtttgcactcgttaggaattatccttcac 307  T
Q  605 ttagtgagatcaaaatggaactcacaa 631  Q
    ||| ||||||||||||||||| |||||    
T  306 ttattgagatcaaaatggaacacacaa 280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 511 - 624
Target Start/End: Original strand, 20477701 - 20477814
Alignment:
Q  511 ttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtg 610  Q
    ||||||||||  ||||||| || |||||| |||||| | |||  ||| |||||| | |||||||||| | |||| ||||| || ||| |||||||| |||    
T  20477701 ttgtttcttgcggatttggtgtctataaatcttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtg 20477800  T
Q  611 agatcaaaatggaa 624  Q
    ||||||||||||||    
T  20477801 agatcaaaatggaa 20477814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 471
Target Start/End: Original strand, 41889058 - 41889130
Alignment:
Q  399 cggctatagttatgctggaatatcttgttttttgtccaagtgccaacatatccaacatttagatcttcaaaat 471  Q
    ||||| ||||||||||||||| | ||||||  | ||||||||  |||||||||||| ||| ||||||||||||    
T  41889058 cggctttagttatgctggaatcttttgtttactatccaagtgtgaacatatccaacttttggatcttcaaaat 41889130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 295 - 475
Target Start/End: Original strand, 41900938 - 41901118
Alignment:
Q  295 ttaacttgtcttgattttcggtcttcacgtatctcggatatgttgctctcctctattgcaatggaagctattcctttgagaaagcttgtcctccaaaatt 394  Q
    ||||||| |||||||||   ||||||   |||||| ||| |||| |||  ||||||||||||  ||| | | |||||||  | |||||| ||||||||||    
T  41900938 ttaacttctcttgatttattgtcttccaatatctcagatgtgtttctcatctctattgcaatccaaggtctacctttgactaggcttgttctccaaaatt 41901037  T
Q  395 gtttcggctatagttatgctggaatatcttgttttttgtccaagtgccaacatatccaacatttagatcttcaaaatgctg 475  Q
    |   ||| ||||||||| |||||||   ||||||  |||||||||| |||||| |  ||||||| |||||| |||||||||    
T  41901038 gcaccggttatagttattctggaattatttgtttactgtccaagtgtcaacatttaaaacatttggatcttgaaaatgctg 41901118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 266 - 465
Target Start/End: Original strand, 13470109 - 13470311
Alignment:
Q  266 ttattgactcgttgatgtgtttgaagggcttaacttgtcttgattttcggtcttcacgtatctcggatatgttgctctcctctattgcaatggaagctat 365  Q
    ||||||||||  | ||| |||||||||||||||||||||||||||||| || |     ||||||  |||  ||| ||| || |||||||| ||||| | |    
T  13470109 ttattgactctatcatgagtttgaagggcttaacttgtcttgattttcagtttatgaatatctcaaataacttgttctactgtattgcaagggaaggtct 13470208  T
Q  366 tcctttgagaaagcttgtcctccaaaattgtttcgg---ctatagttatgctggaatatcttgttttttgtccaagtgccaacatatccaacatttagat 462  Q
    ||||||||  | | ||| ||||| | ||||||| ||   | |||||||||||||||||| | |||| || |||||||| |||   |||||||||||||||    
T  13470209 tcctttgacgaggtttgccctccgacattgttttggcccccatagttatgctggaatatttcgtttgttatccaagtgtcaaggcatccaacatttagat 13470308  T
Q  463 ctt 465  Q
    |||    
T  13470309 ctt 13470311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 559 - 621
Target Start/End: Original strand, 514392 - 514454
Alignment:
Q  559 ctcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatg 621  Q
    |||||| ||||| ||||||||||||| ||||  || ||| |||||||||||||||||||||||    
T  514392 ctcacacatttatccttgtttgcacttgttaagaactgtccttcacttagtgagatcaaaatg 514454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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