View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5574B-LTR4-TNT-insertion-4 (Length: 389)
Name: SO5574B-LTR4-TNT-insertion-4
Description: SO5574B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5574B-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 9 - 379
Target Start/End: Complemental strand, 29094447 - 29094077
Alignment:
| Q |
9 |
aggagtatggttaggtttcctaagcttacagccatggtggaaaagagagaagaaagaaggttttgaatattgaaaaggaagaggtgaagatattttatgt |
108 |
Q |
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| T |
29094447 |
aggagtatggttaggtttcctaagcttacagccatggtggaaaagagagaagaaagaaggttttgaatattgaaaaggaagaggtgaagatattttatgt |
29094348 |
T |
|
| Q |
109 |
ggttgtagtaacttgtaaggaagaagatggctatgggatctttgtcggttttgcagtaacgtggaaatgtgtaggccagtgacgtgtggcaccttctatc |
208 |
Q |
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| T |
29094347 |
ggttgtagtaacttgtaaggaagaagatggctatgggatctttgtcggttttgcagtaacgtggaaatgtgtaggccagtgacgtgtggcaccttctatc |
29094248 |
T |
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| Q |
209 |
atcgctatactagtcaaaatgcatggaccccgtattatttgagataatcatgagctagtgtataacgaattaaattagtctcttaatgcattaaaacttt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29094247 |
atcgctatactagtcaaaatgcatggaccccgtattatttgagataatcatgagctagtgtataacgaattaaattagtctcttaatgcattaaaacttt |
29094148 |
T |
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| Q |
309 |
aaaatagttttgattccgaattttgttagttaaaataataatattaaaatagtttttcaatgctaatatta |
379 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29094147 |
aaaatagttttgattctgaattttgttagttaaaataataatattaaaatagtttttcaatgctaatatta |
29094077 |
T |
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