View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: SO5574B-LTR4-TNT-insertion-5 (Length: 295)

Name: SO5574B-LTR4-TNT-insertion-5
Description: SO5574B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] SO5574B-LTR4-TNT-insertion-5
SO5574B-LTR4-TNT-insertion-5
[»] chr7 (1 HSPs)
chr7 (10-285)||(42714621-42714896)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 285
Target Start/End: Original strand, 42714621 - 42714896
Alignment:
Q  10 cgtatctgggtatgcccttcttgatttagaataaatgcttcccactttcattctgtcaagttagtctgtttcctcacgttcagtcttcaggttttgaaga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42714621 cgtatctgggtatgcccttcttgatttagaataaatgcttcccactttcattctgtcaagttagtctgtttcctcacgttcagtcttcaggttttgaaga 42714720  T
Q  110 aagctactaggctttatgctgctagccgggttcgtgacattgggcctgatcttcggccaaacgattataagacggatgaaatgaacgatgaatctaatgc 209  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42714721 aagctactaggctttatgctgctagctgggttcgtgacattgggcctgatcttcggccaaacgattataagacggatgaaatgaacgatgaatctaatgc 42714820  T
Q  210 tcaaaagaaaacagctaaagataaagaactctcaatagtggaggaactcggtaccatctctttctctggtttaatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42714821 tcaaaagaaaacagctaaagataaagaactctcaatagtggaggaactcggtaccatctctttctctggtttaatt 42714896  T

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