View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5574B-LTR4-TNT-insertion-6 (Length: 696)
Name: SO5574B-LTR4-TNT-insertion-6
Description: SO5574B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5574B-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 9 - 443
Target Start/End: Complemental strand, 32683271 - 32682837
Alignment:
| Q |
9 |
aagaagcatctcaaaccaaaaagaagcaacggtaggagatattggcttgaggagtgagtgttgtgtcttcgaacctaacatggtgtaggtgcccttttaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32683271 |
aagaagcatctcaaaccaaaaagaagcaacggtaggagatattggcttgaggagtgagtattgtgtcttcgaacctaacatggtgtaggtgcccttttaa |
32683172 |
T |
|
| Q |
109 |
ttggaggtgagatttaattacaatcttgatgggtgtgattggaagcgctaggggtgaagatgaggaagattatggtggtggcaatccgacgaagaaggag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32683171 |
ttggaggtgagatttaattacaatcttgatgggtgtgattggaagcgctaggggtgaagatgaggaagattatggtggtggcaatccgacgaagaaggag |
32683072 |
T |
|
| Q |
209 |
ttttcacggtgtgctcgtgctataagatgttggagggtttattgctccaagaagggggagttgaataggctggagaaggtgtatggatgtatatctttgg |
308 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32683071 |
ttttcatggtgtgctcgtgctataagatgttggagggtttattgctccaagaagggggagttgaataggctggagaaggtgtatggatgtatatctttgg |
32682972 |
T |
|
| Q |
309 |
aagagtctggtaccctccaaagtagtggtgttctctttggaagagcctgatccctccaaagtaatggtgtatgaatatcttttgagccactctagtctct |
408 |
Q |
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| T |
32682971 |
aagagtctggtaccctccaaagtagtggtgttctctttggaagagcctgatccctccaaagtaatggtgtatgaatatcttttgagccactctagtctct |
32682872 |
T |
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| Q |
409 |
ccacacttcaaaaaattaagcaaaaatattatgcc |
443 |
Q |
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| T |
32682871 |
ccacacttcaaaaaattaagcaaatatattatgcc |
32682837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 469 - 686
Target Start/End: Complemental strand, 32682811 - 32682594
Alignment:
| Q |
469 |
ccgtgaaactgagttcgttatatgaaacaaagatcattacaacaagtaaatagaacacataaatcctcccttcaaacaaaagcatgataacttttgtgtt |
568 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32682811 |
ccgtgaaactgagttcgttatatgaaacaaagatcattacaacaagtaaatagaacacataaatcctcccttcaaacaaaagcatgataacttttgtgtt |
32682712 |
T |
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| Q |
569 |
catatcagatgtgagtgtaaacgaggacatagagaccagcctcacacttaccacaagaccaattcaaaattatacacatgcatgcatcccatgtttcgta |
668 |
Q |
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| T |
32682711 |
catatcagatgtgagtgtaaacgaggacatagagaccagcctcacacttaccacaagaccaattcaaaattatacacatgcatgcatcccatgtttcgta |
32682612 |
T |
|
| Q |
669 |
atccgctccggacaaatt |
686 |
Q |
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|||||||||||||||||| |
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| T |
32682611 |
atccgctccggacaaatt |
32682594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 20033039 - 20033088
Alignment:
| Q |
16 |
atctcaaaccaaaaagaagcaacggtaggagatattggcttgaggagtga |
65 |
Q |
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| T |
20033039 |
atctcaaaccaaaacgaagcaatggtgggagatattggcttgaggagtga |
20033088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 15 - 289
Target Start/End: Original strand, 7310446 - 7310706
Alignment:
| Q |
15 |
catctcaaaccaaaaagaagcaacggtaggagatattggcttgaggagtgag--tgttgtgtcttcgaacctaacatggtgtaggtgcccttttaattgg |
112 |
Q |
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||||||||||||||||||| |||| || |||||||||||||||||||||| | |||| |||||||||||| ||| |||||||||||||||||| |
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| T |
7310446 |
catctcaaaccaaaaagaaacaacagtgagagatattggcttgaggagtgataatattgtaccttcgaacctaaggtggcgtaggtgcccttttaatt-- |
7310543 |
T |
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| Q |
113 |
aggtgagatttaattacaatcttgatgggtgtgattggaagcgctaggggtgaagatgaggaagat-tatggtggtggcaatccgacgaagaaggagttt |
211 |
Q |
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| T |
7310544 |
--------------taaaaccttgacgggtgtgattgcaagcgctaggggtggagatgaggaagatgtttggtggtggcaacccgatgatggaggagttt |
7310629 |
T |
|
| Q |
212 |
tcacggtgtgctcgtgctataagatgttggagggtttattgctccaagaagggggagttgaataggctggagaaggtg |
289 |
Q |
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||||||| |||||||||||||||| || ||||||||||| || ||||| ||||||||||||||| ||||| ||||| |
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| T |
7310630 |
ccacggtgagctcgtgctataagattttatagggtttattgatctaagaa-ggggagttgaataggttggaggaggtg |
7310706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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